Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01293 ATGTCGCTGCTCGCCTCTCTAATCGGTGGGTTCAAATGGCTGCTTCTGTTGTTATCTTGCTTCCTGTGCTTTGCTGCACGTGCTAGTGCTACAACACTGCGACTCCAACCACCTTCTTTCTCTCCGGCTCCACCACCGGTTGTTCTTGATGATCTCCCACTACCGGCAAATGCGCAAGGGGTGAACCATAGCCATTTGCCTGCTCCTATTCCGTCACGTGCCAATTTCACAAAGAATATTGCTCCCATGCATCCCATTGCTGATGCAATTCCCTCTGCTCTCGCCCAGCCACCATTGTCCCCTTCTGCTTCTGATTGTTGCAAACAAGACATGGTGTGGAAACGAGGGAGTGAAGTTTGCCACTGTGCTTATCCAGTAAAGCTAGACTTGCTTCTTTTGAATGTCTCTCAAAACCCCAACTGGAATGTTTTTCTCAATGATTTGGCTATCCAACTTGGGCTCAAGACTACCCAAATTGAGATTGTTAAATTTTATCTACTCAGCTTATCCACGTTGAATATATCCATGGATATCACTCCGCATAAAGGGATTGGTTTTTCTGCAGATGAAGCGGCTAAAATAAACTCGTCACTTTTACTGCATAAGGTCCAATTGGACCATAGATTCGTGGGTGACTACAAAGTCCTCAATATAACCTGGTTTAAACCTCCACCTCCTTCTCAAGCCCCTACAATTGCTGCATCACCTACGGAAACTCCTCAGAGACGAGCACCTACAACTACGTTATCAAGTACTTCAGACAAAGGAAGGCATTCAAATTTGCTTCTTATTCTTGGAATTGTTACTGGCGTACTCTTCATTTCCATTGTATGTGTACTTATACTTTGTTTATGCACATTGCGGCCAAAAACAACACCGCCTCCCACAGAAAATGAAAAACCAAGGGTGGAAAGTGCAGTTCCAACTTTTGGCTCGCTTCCCCACCCAACCAGTACACGCTTTATTGCTTATGAAGAACTTAAAGAAGCAACAAATAATTTTGAACCAGCAAGTGTACTTGGAGAAGGAGGTTTTGGTAGAGTTTTTAAAGGTGTCTTAAATGACGGAACTGCTGTTGCAATTAAGAGACTTACTAGTGGAGGGCAACAGGGTGACAAAGAATTTTTGGTTGAGGTCGAGATGCTTAGTCGGTTGCACCATCGTAACCTTGTAAAACTAGTGGGATACTATAGCAATCGTGACTCATCACAAAATCTACTTTGCTATGAGCTTGTCTCGAATGGAAGTTTGGAGGCCTGGCTTCATGGTCACCTGGGAATAAATTGCCCTTTGGATTGGGACACCAGAATGAAGATCGCCCTTGATGCTGCAAGAGGACTTGCATACCTGCATGAAGATTCACAGCCATGTGTTATACACAGAGATTTCAAGGCATCCAACATATTGCTTGAGAACAACTTTCATGCTAAAGTTGCAGATTTCGGTCTAGCTAAACAGGCACCTGAAGGCAGGGCTAATTATCTATCTACTCGAGTCATGGGCACATTTGGGTATGTAGCTCCTGAGTATGCTATGACCGGACATCTACTCGTAAAAAGTGACGTTTATAGCTACGGTGTTGTCTTGCTGGAACTGTTGACCGGTAGGAAACCAGTGGATATGTCACAGCCAACTGGACAAGAGAACCTAGTTACTTGGGCAAGGCCAATTCTTAGAGATAAGGACCGATTGGAAGAACTTGCTGATCCAAGGCTTGGGGGAAGGTACCCAAAGGAAGATTTTATACGTGTTTGCACTATTGCTGCAGCCTGTGTTGCTCCTGAAGCAAGCCAACGACCTACAATGGGTGAAGTGGTACAATCACTTAAAATGGTGCAACGGATCACAGAATCCCAAGATCCTGTGTTGACCTCATCCAATACACGGCCCAACCTGAGACAGTCCTCTACCACTTACGAATCTGATGGGACATCTTCAATGTTTTCTTCTGGTCCATACTCTGGTCTAAGTGCCTTTGATTATGACAACATTTCGAGGACGGCTGTTTTCTCTGAAGATCTTCATGAAGGGCGATGA 2037 0.4467 MSLLASLIGGFKWLLLLLSCFLCFAARASATTLRLQPPSFSPAPPPVVLDDLPLPANAQGVNHSHLPAPIPSRANFTKNIAPMHPIADAIPSALAQPPLSPSASDCCKQDMVWKRGSEVCHCAYPVKLDLLLLNVSQNPNWNVFLNDLAIQLGLKTTQIEIVKFYLLSLSTLNISMDITPHKGIGFSADEAAKINSSLLLHKVQLDHRFVGDYKVLNITWFKPPPPSQAPTIAASPTETPQRRAPTTTLSSTSDKGRHSNLLLILGIVTGVLFISIVCVLILCLCTLRPKTTPPPTENEKPRVESAVPTFGSLPHPTSTRFIAYEELKEATNNFEPASVLGEGGFGRVFKGVLNDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVSNGSLEAWLHGHLGINCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPTGQENLVTWARPILRDKDRLEELADPRLGGRYPKEDFIRVCTIAAACVAPEASQRPTMGEVVQSLKMVQRITESQDPVLTSSNTRPNLRQSSTTYESDGTSSMFSSGPYSGLSAFDYDNISRTAVFSEDLHEGR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01293 678 MobiDBLite consensus disorder prediction 232 255 - -
Cca02g01293 678 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 70 678 - -
Cca02g01293 678 ProSiteProfiles Protein kinase domain profile. 334 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01293 678 Gene3D Phosphorylase Kinase; domain 1 316 411 - -
Cca02g01293 678 MobiDBLite consensus disorder prediction 228 255 - -
Cca02g01293 678 Pfam Protein tyrosine and serine/threonine kinase 338 609 IPR001245 GO:0004672|GO:0006468
Cca02g01293 678 Gene3D Transferase(Phosphotransferase) domain 1 412 630 - -
Cca02g01293 678 PANTHER OS01G0750732 PROTEIN 70 678 - -
Cca02g01293 678 CDD STKc_IRAK 340 610 - -
Cca02g01293 678 MobiDBLite consensus disorder prediction 291 310 - -
Cca02g01293 678 MobiDBLite consensus disorder prediction 617 648 - -
Cca02g01293 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Cca02g01293 678 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Cca02g01293 678 SUPERFAMILY Protein kinase-like (PK-like) 309 611 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01293 Cca-Chr2 31066995 31073726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01293 38 678 Receptor kinase-like Gene Family AT4G02010 68.538 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Cca02g01293 PK_Tyr_Ser-Thr 8.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01293 - - gmx:100792818 1131.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01293 02 31066995 31073726 Cca02g01293 02 31066995 31073726 ECH
Cca03g02269 03 43562510 43572628 Cca02g01293 02 31066995 31073726 PCT
Cca03g02758 03 48997764 49005774 Cca02g01293 02 31066995 31073726 PCT