Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01288 ATGGGTTGGAAGAGAAAAGCGAAAGAGTTGTTGAGGCCGAGAGAGGTGTTGTACCTCTTCACCATCACAATCCTGAGCCTCCTCCTCCCTCTCTCTTTTCTCCTCTTGGCCACTCTCTCCGGAGCCCAATACTATCTTCAAACCCTCACTTCGTTACAATTTTCACCACAACCCTTTCCCCGTCTATTCCACATCGCCCTCAACATCAACCCATGTATTCTCTACGTTCTCGTCTCCATTGTCAGCGTGGCAACCCTCATCCAGGGCTTAATGGGCAAAATAAAAATCACTCTTTTCAGCGACTCCCCATCACCATCACCATCACCATCCAGGTCCTCTCGTCTCTCCACGGCGTGGGCTCTCCTTTGCGCGTTCCAAGTTTGCGTGGGCCTGGGCATCGAGGGGAGCATTGCGGCTGGGCTTTATGACGAGGACTACGAGTCCAGTTTCGGCGTGGAGAGAAGCCTGGTGAGCAGGATGATTTTTCTGTTGGGCCTGCACGAGACCACCCATGTTTGGTGCAGGATGGTGGTCAGGCCCGTCGTGGATGACACGGTTTTCGGCGCCTCCCGGAGGGAGAGGTGGATTGAGAGAGTGGGCTTGGCGGCGGGCTTGGGCACGTTGTGGTGGTGGAGGCTGAGGGAGGAGGTTGAGACTTTAGTGGTTGTGGCGCAAGTGAAGAATGAGCAGTTAATGGATGTGGGACTTGGGGACTTCGTTGGATGGTGGTTGTATTATCTCGTTGTGACCATTGGGATGGTGAGGATCGTGAAAGGTCTCATTTGGATGTTCATGATTTCTCTCTGTACAAGAAGGCCCATAACAGAACAAGTGGAGGAGAGTCAGAACGATGACAAGgttttggctcaaaatcggAAATTAGGTGGGCTTCTATTCAAGCCTGGCGGGAGTAACTTGCAGCATGCAACAACATTCTCATTTCTGTTTCTGGTTAATGCTGGCTATTTGAAAAAGACTAATCAACAGATTGACTGTGGTGGTAATGTTTTGGCTTCTCCAACGCGACTCAAAGAAATAGCAAGAAGCCAGGTGGATTACATACTTGGAAGCAATCCAGAGAATATGTCATACATGGTTGGATACGGAGGAAAATATCCTGAAAGAATACATCATCGTGCGTCGTCATTGCCATCCGTAGATGAGTACCGTGGCCACATTGGTTGCAAAGAAGGATCCTTTTATTTTCAAACCCAGAATCCAAACCCCAACTTGCTTTCAGGAACTCTTAAACACTTGGGGtgcggggaaggggggtgtggggtgctgggaagggggtgcgggGGCGGTTATGACTCTTTACAAGTAGAGGATGATGTGTTCCAAGGAGAACACGGCTTCTCTGCTATACTGAGAGGGATGAATACTCTTCCCACTACTGAAGAGCAAAACCAGCAACACCACCAAAATGATTTCAACTTTGATCACTTCATGTTAGAGGATTTCAGCTTTGAACCTGTTCCACAACCAAAGCAGCCTCTTCAAGAAACTAAGGAACCAAAGAATAAACAAGTGCTGCCATCTTCTCTAGCATCATTGGAGCTACTGAGCCATTATGGAAGCAGGTTCAAGAGGGTGGAGAAGCAAAACATCAGCCATAGTGTTGAAACTTGTGTGAGTACTCCTCAAAAGTTGTCAACCGAAGAAATAATAAGATTGGCTGGAGCAAGGTATATCCAGCACTCTACACAATGGCATGATGATGTTTGCATGCCCATGCACCCTTATGGATTTGGCTTCGGGATTTTATCTGAGGAAGAAAATAGGGACGTGGAACTTGCTCAGTTTCTTCTTGCAGCTGCTGAGAGGGTAGGGTGCCAACAATTTGAACGTGCCAGTGTGTTACTCTTCCATCTTCAGTGGAACCCTTCAGGCGGTGGTGGAAGCCCCGTTCAGAGAGTTGTTTTTCATTTCGCTCAAGCACTTCTAGAAAGGATCAAAAGAGAAACGGGAGGAGGAAAGGTGGCAGTGAACAAGTCCGAGAACAATAACGAGGAAAGGGAATTGATTGGGAATTTAATATCGGATACCAAAAAGGCTGTTATATGCCATCAAAAAATTCCTTTCAATCAAGTAATGCAGTTTGCTGGGGTACAAGCTATAGTGGAACAGGTTGCATTTCAAACCAAAATTCATCTCATAAACCTTGATATTGGATGTGGGGTGGAATGCACGACTTTGATGCAAGCACTGGCTGAGAGGAATGAAAGGCAAGTTGAGCTTCTTAAGATAACTGCCATTGGACTCAAAGGAAAGACCGAACTAGAAAAGACAGGGAAAAGGTTAGTGAATTTTGCTGAATCCTTAAACTTGCCCTTTTTATATAAGGTAGTTTATGTTACAAACATCATAGAGATTAAGGTAGAGCAATTTGATATTGAAGATAATGAAGCCGTAGCTGTGTATTGTCCAATCATACTGAGGACTATGGTGTCGGATTCTGATTCCTTGGAACACTTGATGCGGGTGATCAGAAAAATCAGACCAACTATAATGATTGTTCTTGAGTTGGAAGCAAACCATAACTCACCCTCCTTTGTGAATCGCTTCATTGAAGCGTTGTTCTTCTATGCGGCGTTTTTTGACTGCATTGAGACCTGCATGAAGGAGGATTATGAGTGCAGAGTGACAATAGAGGGGATATTATCTGAAGGGATACGAAGCATTGTTGCTATGGAAGATGGAGAAAGGAAGGTTAGGAATGTGAAGATAGATGTTTGGAGAAGGTTCTTTGCGAGGTATAGAATGGTGGAGACCACATTTAGTGAGTCATCTTTGTACCAAGCTAACTTGGTAGCCAAAAGGTTTGCGTGTGGGGATTTTTGTACTGTGGGAAAAAACGGGAAGTGTCTAATAGTTGGATGGAAGGGGACCCCAATTCATTCAATCTCAGCTTGGAAGTTTCTTTGA 2928 0.4454 MGWKRKAKELLRPREVLYLFTITILSLLLPLSFLLLATLSGAQYYLQTLTSLQFSPQPFPRLFHIALNINPCILYVLVSIVSVATLIQGLMGKIKITLFSDSPSPSPSPSRSSRLSTAWALLCAFQVCVGLGIEGSIAAGLYDEDYESSFGVERSLVSRMIFLLGLHETTHVWCRMVVRPVVDDTVFGASRRERWIERVGLAAGLGTLWWWRLREEVETLVVVAQVKNEQLMDVGLGDFVGWWLYYLVVTIGMVRIVKGLIWMFMISLCTRRPITEQVEESQNDDKVLAQNRKLGGLLFKPGGSNLQHATTFSFLFLVNAGYLKKTNQQIDCGGNVLASPTRLKEIARSQVDYILGSNPENMSYMVGYGGKYPERIHHRASSLPSVDEYRGHIGCKEGSFYFQTQNPNPNLLSGTLKHLGCGEGGCGVLGRGCGGGYDSLQVEDDVFQGEHGFSAILRGMNTLPTTEEQNQQHHQNDFNFDHFMLEDFSFEPVPQPKQPLQETKEPKNKQVLPSSLASLELLSHYGSRFKRVEKQNISHSVETCVSTPQKLSTEEIIRLAGARYIQHSTQWHDDVCMPMHPYGFGFGILSEEENRDVELAQFLLAAAERVGCQQFERASVLLFHLQWNPSGGGGSPVQRVVFHFAQALLERIKRETGGGKVAVNKSENNNEERELIGNLISDTKKAVICHQKIPFNQVMQFAGVQAIVEQVAFQTKIHLINLDIGCGVECTTLMQALAERNERQVELLKITAIGLKGKTELEKTGKRLVNFAESLNLPFLYKVVYVTNIIEIKVEQFDIEDNEAVAVYCPIILRTMVSDSDSLEHLMRVIRKIRPTIMIVLELEANHNSPSFVNRFIEALFFYAAFFDCIETCMKEDYECRVTIEGILSEGIRSIVAMEDGERKVRNVKIDVWRRFFARYRMVETTFSESSLYQANLVAKRFACGDFCTVGKNGKCLIVGWKGTPIHSISAWKFL 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01288 975 Pfam GRAS domain family 600 973 IPR005202 -
Cca02g01288 975 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 468 973 IPR005202 -
Cca02g01288 975 ProSiteProfiles GRAS family profile. 590 973 IPR005202 -
Cca02g01288 975 SUPERFAMILY Six-hairpin glycosidases 287 416 IPR008928 GO:0005975
Cca02g01288 975 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 353 379 IPR018221 -
Cca02g01288 975 Pfam Glycosyl hydrolase family 9 290 416 IPR001701 GO:0004553|GO:0005975
Cca02g01288 975 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 468 973 - -
Cca02g01288 975 Gene3D - 270 423 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01288 Cca-Chr2 31003127 31013283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01288 597 974 GRAS Transcription Factor Family AT1G66350 29.815 2.44e-43 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca02g01288 GRAS 5.2e-77 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01288 - - ccaj:109806982 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01288 02 31003127 31013283 Cca02g01288 02 31003127 31013283 ECH
Cca03g02764 03 49033590 49034542 Cca02g01288 02 31003127 31013283 PCT