Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01287 ATGGTGTCCAAACTTACCGACTCTGCTTCCAAACCTCGAACTCAACCTGGAGACTCAACAAATGATGCTATCGGAACTTTACCCTTCAAGATAAACCAGTTGAAAAGGCAAATCCAGGCGGAGAGAATTGCATACATTAAAGAAAAAATTCAGAGGAATGAGAAGAAGCTACATTGTCATATGTCAGGAGTCATGTCAGCAATATCAACAAGGGGTTCTTCACGGACAGAGGAAAATAGGAAAATTCCAATTCTTTCTTCAAGAATGGACCATCCTTTATGTAAATTCAGTGGTTTCTCTCCAGTCTCAGGAGACAAAGACCACAACAATCAAGATTTATTATCCGCTACAACTCCAAGTATCAAAATTCCATACATCGAAAGATTACCACCATATACCTCTTGGATATTTCTGGACAGAAATCAGAGGATGGCTGAAGATCAGTCAGTGGTTGGAAGAAGACGTATCTACTATGATCAACATGGAAGTGAAGCACTGATATGTAGTGACAGTGAGGAAGAGTTAACAGAACCTGAGGAAGAAAAACATGAATTTTCTGAGTCTGAAGATCGAGTTCTATGGATGGCATTTGAGGAATATGGGTTAAAAGAGGAGGTACTGAATATTGTTAGCGAATTTGTTGGGGGCACCAGTTTAGAAATTCAGGAGAGGTACAAAAGTATCAAGGAAAAGAACATTGGAAGGTTAGACCAGCCTTCAGAAAACTCAGGAGAACCTGAATCTACTATTGGCATATGTCCAGAGAAAAGCCTTAGTGCTGCATTAGATTCTTTTGATAATCTTTTTTGTCGCCGATGCCTGATTTTTGACTGTCGTCTGCATGGCTGTTCTCAACCTTTAATATATCCTAGGGAAAAGCAGACAGTTTGGTCTGATCCTGAAGGTGACAGGAAACCATGCAGTGATCAGTGTTACCTTCAGGTAAAGGTAGTCAAATGTGTGTCCGAAGATTCAACTTCTAGGTCTGAGCAGAATAAAAGATCTACAATTATGGAAGAGACAGATGGGGTATTGGCACCCTCCAATATAGAAGAACCTAGTAATCAGAGTACATTACCTTTTCCAACAGATGTTGATTGTCATGGATCTCTCAATTTAAATGTTCCTATCTCAGTTAGTGTGGAAAAACGAAAAGCCACAGATCAGTCAGACACTGCCTTCTGTGACCCAACACTCCCTCCTGATGATTCTCAGAATTCCTGTAAAAAGCTGAAGACAATCTCAGATGATGTAGTTACTGTAAATAGTGATTCTAGTAAGGACATAAATTTAGGTGCATGTGATGAAAGTCAACATACAATCACATGTGCAGTTTTGGACAAAGCTGTTACACATGATTCAAATAAATTAATAGAGTCTTCTAGCACTTGCCATAGTGATGAGCAGGACAAAAGTATTGGGGATGGACCAAAAGATCCTATAAATAAGACAGAATTTAAGAAGTTGTCCAATTCAATGGAAGTGAAAAATGATGGGATGATAAGTCTCTCAGATTGGAAACCTCTGGAGAAAGAATTATACTTAAAGGGAGTAGAAATGTTTGGCAGAAACAGTTGCCTCATAGCAAGGAACTTACTTTCTGGCATGAAGACTTGCATGGAAATAGCTAGTTACATGCATTCTGGAGGAGTGTCAATGCCCCACGGATCTATTATTGCATCTAGTTCAATCATGGAAGACAAGGGAAAATTTGATGTAGAGTGCACAGACCAGGAGATGCCATCTAGATCACGGTTGCTGAGGAAAAGGGGCAAAACAAGGAAGTTTAAATATTCTTGGAAGGCTGCTGGCCACCCATCAATATGGAAAAGAATTGCTGATGGGAAAAACCAATCTTGCAAGCAGTATACACCATGTGGATGTCAGTCAATGTGTGGAAAGGAATGTAGTTGTGTTAATGGTGGAACTTGCTGTGAAAAATATTGCGGTTGTTCAAAAAGCTGCAAAAATCGATTTAGAGGATGTCATTGTGCCAAGAGTCAGTGCAGAAGTCGACAATGCCCATGCTTTGCTGCAGGAAGGGAATGTGACCCAGATGTCTGTCGGAATTGTTGGGTTAGCTGTGGGGATGGTTCATTAGGGGAGCCACCTCGGCGTGGAGAAGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAACAACAGAGGATTCTCTTGGCAAAGTCTGATGTTGCAGGATGGGGAGCCTTCTTGAAAAATCCAGTTAACAAAAATGATTACCTAGGAGAGTACACAGGAGAACTGATCTCCCACCGAGAAGCCGATAAGCGTGGGAAAATATATGATCGTGCAAACTCGTCTTTCCTTTTTGACTTGAATGATCAGGCAAATATCTGGCATCATCTATATTTTCTCCTATCTTGTGCTGATTACGTTCTTGATGCTTATCGCAAAGGGGATAAGTTAAAATTTGCCAATCACTCATCAAACCCTAACTGCTATGCAAAGGTAATGCTGGTTGCTGGAGATCACCGAGTAGGAATTTTTGCCAAGGAACACATCGATGCTAGTGAGGAGCTCTTCTATGATTATCGTTATGGTCCAGATCAAGCACCACCATGGGCACGTAAACCTGAGGGTTCTAAGAGAGACGACTCAACAGCCCCTCAAGGCAGAGCAAAGAAACACCAGTCTCATTGA 2661 0.4104 MVSKLTDSASKPRTQPGDSTNDAIGTLPFKINQLKRQIQAERIAYIKEKIQRNEKKLHCHMSGVMSAISTRGSSRTEENRKIPILSSRMDHPLCKFSGFSPVSGDKDHNNQDLLSATTPSIKIPYIERLPPYTSWIFLDRNQRMAEDQSVVGRRRIYYDQHGSEALICSDSEEELTEPEEEKHEFSESEDRVLWMAFEEYGLKEEVLNIVSEFVGGTSLEIQERYKSIKEKNIGRLDQPSENSGEPESTIGICPEKSLSAALDSFDNLFCRRCLIFDCRLHGCSQPLIYPREKQTVWSDPEGDRKPCSDQCYLQVKVVKCVSEDSTSRSEQNKRSTIMEETDGVLAPSNIEEPSNQSTLPFPTDVDCHGSLNLNVPISVSVEKRKATDQSDTAFCDPTLPPDDSQNSCKKLKTISDDVVTVNSDSSKDINLGACDESQHTITCAVLDKAVTHDSNKLIESSSTCHSDEQDKSIGDGPKDPINKTEFKKLSNSMEVKNDGMISLSDWKPLEKELYLKGVEMFGRNSCLIARNLLSGMKTCMEIASYMHSGGVSMPHGSIIASSSIMEDKGKFDVECTDQEMPSRSRLLRKRGKTRKFKYSWKAAGHPSIWKRIADGKNQSCKQYTPCGCQSMCGKECSCVNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPRRGEGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQANIWHHLYFLLSCADYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFAKEHIDASEELFYDYRYGPDQAPPWARKPEGSKRDDSTAPQGRAKKHQSH 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01287 886 MobiDBLite consensus disorder prediction 463 482 - -
Cca02g01287 886 MobiDBLite consensus disorder prediction 460 482 - -
Cca02g01287 886 ProSiteProfiles CXC domain profile. 609 708 IPR026489 -
Cca02g01287 886 Pfam SET domain 733 851 IPR001214 GO:0005515
Cca02g01287 886 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 17 884 IPR045318 GO:0006338|GO:0018024
Cca02g01287 886 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 17 884 - -
Cca02g01287 886 MobiDBLite consensus disorder prediction 863 879 - -
Cca02g01287 886 MobiDBLite consensus disorder prediction 1 24 - -
Cca02g01287 886 Pfam CXC domain 661 692 IPR041355 -
Cca02g01287 886 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 886 IPR025778 GO:0031519
Cca02g01287 886 MobiDBLite consensus disorder prediction 858 886 - -
Cca02g01287 886 Gene3D SET domain 623 854 IPR046341 -
Cca02g01287 886 SMART CXC_2 657 694 IPR033467 -
Cca02g01287 886 CDD SET_EZH 722 853 - -
Cca02g01287 886 ProSiteProfiles SET domain profile. 722 852 IPR001214 GO:0005515
Cca02g01287 886 SUPERFAMILY SET domain 594 856 IPR046341 -
Cca02g01287 886 SMART set_7 722 858 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01287 Cca-Chr2 30981359 30989095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01287 711 855 C2H2 Transcription Factor Family AT2G23740 27.517 7.88e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca02g01287 SET 2.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01287 - - gmx:100808730 1576.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01287 02 30981359 30989095 Cca02g01287 02 30981359 30989095 ECH
Cca03g02766 03 49047075 49056437 Cca02g01287 02 30981359 30989095 PCT