Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01281 ATGTCTTCGATTCCGCGCCCTGCGAGTTCGGGATCGTCGGAAGGCGGAGATCCGGCGATGGACGAGAGGAAGAGGAAGCGGATGGAGTCGAACCGCCAATCGGCGAGGAGATCGCGGATGAGGAAGCAGAAGCAGCTGGAAGACCTCACCGACGAAGCGAGCCGGTTGCAGGTCGCGAACGAGCGTATGGTGCAGAGCATAAAGGCGAAGGAGGAAGCGTACGTGGAGATGGAAGCCGCCAACGACATCCTCCGAGCTCAGACGACGGAGCTCGCGGACCGGTTGCGGTTCCTGAACTCCATTCTGGAGATCGCTGAAGAGGTTAGCGGCCTCTCCGTTGAGATCCCGCAGATTCCGGACCCTCTCCTGAAGCCCTGGCAGATCCCTCACCCTATCATGGCGTCGCCGGACATGTTCCTCCATGGAAATCAAGGCCTGTTTGCTTGA 447 0.5996 MSSIPRPASSGSSEGGDPAMDERKRKRMESNRQSARRSRMRKQKQLEDLTDEASRLQVANERMVQSIKAKEEAYVEMEAANDILRAQTTELADRLRFLNSILEIAEEVSGLSVEIPQIPDPLLKPWQIPHPIMASPDMFLHGNQGLFA 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01281 148 Coils Coil 25 87 - -
Cca02g01281 148 Gene3D - 21 74 - -
Cca02g01281 148 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 21 68 IPR004827 GO:0003700|GO:0006355
Cca02g01281 148 CDD bZIP_plant_GBF1 24 74 IPR045314 GO:0003700|GO:0006355
Cca02g01281 148 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 138 - -
Cca02g01281 148 SMART brlzneu 19 83 IPR004827 GO:0003700|GO:0006355
Cca02g01281 148 Pfam bZIP transcription factor 23 79 IPR004827 GO:0003700|GO:0006355
Cca02g01281 148 MobiDBLite consensus disorder prediction 1 59 - -
Cca02g01281 148 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 26 41 IPR004827 GO:0003700|GO:0006355
Cca02g01281 148 SUPERFAMILY Leucine zipper domain 23 76 IPR046347 GO:0003700|GO:0006355
Cca02g01281 148 MobiDBLite consensus disorder prediction 17 55 - -
Cca02g01281 148 PANTHER BZIP TRANSCRIPTION FACTOR 53 1 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01281 Cca-Chr2 30950264 30951730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01281 21 139 bZIP Transcription Factor Family AT3G62420 55.738 6.80e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca02g01281 bZIP_1 4.8e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01281 K25786 - gmx:778189 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01281 02 30950264 30951730 Cca02g01281 02 30950264 30951730 ECH
Cca02g01281 02 30950264 30951730 Cca03g02773 03 49100101 49100550 ECH
Cca03g02773 03 49100101 49100550 Cca02g01281 02 30950264 30951730 PCT