Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01277 ATGACTTACGAATCTCCATTTATCAATTCTACGAATCTTCATCTATCAATGGCCTTGAGGCCTTCGTCATTGCTGATCCTCCTACTGGCATTTAGTGCATTGACAATTCTCATCTTTTTGACACCATGCTGGTATTACATGTTCATACATATGGAGAACCATGTGAATTTGAACTCAAGAAACATCGTGTCCCAATTGCAATCAGAAATTAAGCACTCAGCTGAACTGTTAAACCCTATGAAATCATCATCAACCAATTTAGCAAGATTTCTGAGTTCAACCCTTGATACAACTTATATCTCCTTCTCTGATATTGAAGGGAAGGTAGCTCCGTCATTGTTTCAAGCATTTGAGACAGTTCCATACCTAGCTGAAATCTCATACGTAGGGACGGAAGGTCTCTTTTTCTCTTACTACACTGATCATGATCGAGCTCTAGCTATGTACTCTAACTTATCATCTAGTTGGGGTGCCTCAAACAAAACCTATATTCAACCTGTGAATCGTGAAACTGGAGAGGTTTATGGGGAAGTCTTAGACATAATATCTAACCCTTTTCTGAATGCAAGTTGGATTGAGGAAGGAATTGATGAGTCAAATGGGTTTGCTTCATTGGGAACCAAGTGGGACAATGATGATGTTCTTTTGTTTCTCAGTTCAGCTAGAATCACGAGTAAAGGAGTGATCTCTATGGGGTTTTCAGCAAAAGCTATATCTGATTTTGTCACTCGCATTGACCAACAAGGCGTGAGATCTTATTTGGCCACCAAAGATGGAAATGTTCTTGTGCAAGGCTTTCAACATACCCACTTCGTCGACTTTTATAATGATACAGTTTTCTTCAAATCACTGAATGCAAATGACGATCTCACGAGTAATGACGCCACTCTCTCGTGCAAGGATGAAGCTGCTACTTCTAGTTTGAATATTTGGGATACTAAATATTTAGTTAAATGCTACACCATGGATATAATGGGAATAGAATCGGTGTATGTCTTGGCTTTCCCACAAAAAGGATTTGCGAGCTTTGATCTCAATTACAAGAAAGAGGGATTGATATTATTTGTAGCAACGATGGTCACTGCATTTATTGCTTTGTTCAGTTTTCTATGCATAACCTGCAAAGCCATGAGGCGAGACATGCATTTGTGTGCCTCACTCATCGAAAAGTCGGAAGCGACCCAACGAGCTGAGAAAAAGAATAAGAATAAGAGCAATGCTCTTGCAAGTGCAAGCCATGATGTTCGTGCTTCTCTCGCAGGCATCACCGGCTTGATAGATATTTCTTATGAGTTAGTGGTCCCCGGTTCAGAATTGGAGACCAATTTGAAACAAATGAGTAGTTGTACCCATGACTTACTAGGACTGTTGAATTCTATACTTGACACAAGCAAAATAGAGTCAGGGAAAATGCCTCTTGAGGAAGAGGAGTTTAATGTGTTCCTTCTCCTAGAAGATGTGGTTGACTTTTACTATCCCGTGGCTATGAAGAAAGGTGTAGATATTGTATTGGACCCTTGTGATGGTTCTGTTATGAGATATTCACGCGTGAAAGGTGACAGGGGAAAACTGAAACAAGTTTTGAGTAATTTGCTGAGCAATGCTGTTAAATTTACTAATGAGGGGCACATAGCGGTTCGTGCATGGACTAAGAAGCCAAGATTGCAGAACTCAACAGTCACTTGTAGCCAATGGAGTTTCAAGAAATATTTATCACACTTATTTCGTAACAAAAAGGAAGCACGCGGTGACATGGAAACCCTGCATTCAGTCCGAGAAGAACCACGTTTCATGGATTTTATATTTGACGTGGATGACACGGGAAAAGGAATTCCTAAAGAGAATTACAAGTCTGTGTTCGAGGATTATGTCCAAGTTAAAGAAACTGCTTTGGGCCAAGGAGGAACTGGCTTGGGACTTGGGATTGTGCAGAGCTTGGTGTGTTTGATGCATGGAGATATTGAAATTATAGAGAAGGATACCGGTGAAAAAGGAACATGTTTCAGGTTCAATGTGCTTCTTACATGTGAGAATGAGACAATGATCGATGGTAGCACAATGGATGATATTGAGTGTGGATCAAGAGACAAAATCCAAGCTCAGGAGCAAACAATGCATGCTACGAGTTCTAGCTTTAGAGCATGTTCCATGAGTCCTAGGTTACATATTTTTAGCTCTAGTCCTAAGCCTGAGCCTTCTCTCGTGGTTCTTTTCATCATTGACAAGGAGCGTCTAAGGACATTACAAAGGTTCATGGAGAGGATAGGGATCAAAGTTAAAGTTGTAAATTCAGAGCAAGATTTGTTGGATACTCTTAAGAAGATCAAGCAAAAGCATCAATATTCTGATGAGTCTTCAGATTTGAGTTCTCAATCAACATCTCATAATTCTCCTGTTATATCCACAAGAGTTCCTTTGAGTTCTATGGATGTAATTGAGAACATGCCTTTAGTTTTCAAGAAGACAGATATTGGAGCTACCCCTGGCTTCATCCTTATTGTGATTGATTCTCTTGCACCACAATTTGTTGAGCTTTACAAGATTGTATCTAGCTTCAAAAGAGAGTTCTGCAACACCTGTAAGGTGGTTTTGTTGGACAAGCCTTTTGCGCGTAATACCAACTTCAATGTCATTGATCAAAATGACATTGTTATATCCAAACCATTTCATGGTAGTCGTTTGTTTCATACCATAAAGCTTCTTCCTGAATTTGGTGGGGAGTGCCAATTGAGTTCTACTAAGGGTAAGAGGAAAATTACTAGTGAGAGAAATTCATTGAGGACTTGTGAGGATTCAAGCATGTCAAAATACAGGTCTCCAACAAATAATGGAAGCACATTTCAAAGTGGTGAACAAATTTGGAAGGGAAGTCGACTTAAGGAAATACGAAGTCATGTTTATCAAGGAGAAATACAAGAATGTGGGGACTCATCAGGGTGTAAGAAACCCTTGAGTGGTAAGAAGTTTTTGGTTGCTGAGGACTCTGATTTGTTACGCAAGTTAGCTTCAGTTACTTTGATTTCTCTTGGTGCAACTATTGAGCAGTGTGAGAATGGTCAACAAGCTGTTCAACTAGTGCGTGAAGCTCTATCTCGGAATTTTTCTAATCCTCCTTATGATTACATCTTAATGGATTGTCAGATGCCAGTAGTGGATGGGCTTGAAGCAACAAAGGAGATACGAAAGATGGAGAAACGGTATGGTGTCCACATTCCTATCATTGCATTGACTGCATGCACTGAAAAAATGGCGGTAGAGACTGGAATAGACTATCATATAGTCAAGCCAATTAAGAGAGAGCTTTTACTTGAAGCCATCAAATGTATACATGCCAATACCTCATAA 3345 0.3979 MTYESPFINSTNLHLSMALRPSSLLILLLAFSALTILIFLTPCWYYMFIHMENHVNLNSRNIVSQLQSEIKHSAELLNPMKSSSTNLARFLSSTLDTTYISFSDIEGKVAPSLFQAFETVPYLAEISYVGTEGLFFSYYTDHDRALAMYSNLSSSWGASNKTYIQPVNRETGEVYGEVLDIISNPFLNASWIEEGIDESNGFASLGTKWDNDDVLLFLSSARITSKGVISMGFSAKAISDFVTRIDQQGVRSYLATKDGNVLVQGFQHTHFVDFYNDTVFFKSLNANDDLTSNDATLSCKDEAATSSLNIWDTKYLVKCYTMDIMGIESVYVLAFPQKGFASFDLNYKKEGLILFVATMVTAFIALFSFLCITCKAMRRDMHLCASLIEKSEATQRAEKKNKNKSNALASASHDVRASLAGITGLIDISYELVVPGSELETNLKQMSSCTHDLLGLLNSILDTSKIESGKMPLEEEEFNVFLLLEDVVDFYYPVAMKKGVDIVLDPCDGSVMRYSRVKGDRGKLKQVLSNLLSNAVKFTNEGHIAVRAWTKKPRLQNSTVTCSQWSFKKYLSHLFRNKKEARGDMETLHSVREEPRFMDFIFDVDDTGKGIPKENYKSVFEDYVQVKETALGQGGTGLGLGIVQSLVCLMHGDIEIIEKDTGEKGTCFRFNVLLTCENETMIDGSTMDDIECGSRDKIQAQEQTMHATSSSFRACSMSPRLHIFSSSPKPEPSLVVLFIIDKERLRTLQRFMERIGIKVKVVNSEQDLLDTLKKIKQKHQYSDESSDLSSQSTSHNSPVISTRVPLSSMDVIENMPLVFKKTDIGATPGFILIVIDSLAPQFVELYKIVSSFKREFCNTCKVVLLDKPFARNTNFNVIDQNDIVISKPFHGSRLFHTIKLLPEFGGECQLSSTKGKRKITSERNSLRTCEDSSMSKYRSPTNNGSTFQSGEQIWKGSRLKEIRSHVYQGEIQECGDSSGCKKPLSGKKFLVAEDSDLLRKLASVTLISLGATIEQCENGQQAVQLVREALSRNFSNPPYDYILMDCQMPVVDGLEATKEIRKMEKRYGVHIPIIALTACTEKMAVETGIDYHIVKPIKRELLLEAIKCIHANTS 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01277 1114 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 391 471 IPR036097 GO:0000155|GO:0007165
Cca02g01277 1114 CDD HisKA 401 465 IPR003661 GO:0000155|GO:0007165
Cca02g01277 1114 PANTHER HISTIDINE KINASE CKI1-LIKE 50 1108 - -
Cca02g01277 1114 Gene3D - 970 1112 - -
Cca02g01277 1114 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 458 671 IPR036890 -
Cca02g01277 1114 SMART REC_2 987 1106 IPR001789 GO:0000160
Cca02g01277 1114 PRINTS Bacterial sensor protein C-terminal signature 600 614 IPR004358 GO:0016310|GO:0016772
Cca02g01277 1114 PRINTS Bacterial sensor protein C-terminal signature 618 628 IPR004358 GO:0016310|GO:0016772
Cca02g01277 1114 PRINTS Bacterial sensor protein C-terminal signature 634 652 IPR004358 GO:0016310|GO:0016772
Cca02g01277 1114 SUPERFAMILY CheY-like 984 1107 IPR011006 -
Cca02g01277 1114 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 519 674 IPR003594 -
Cca02g01277 1114 SMART HisKA_10 403 469 IPR003661 GO:0000155|GO:0007165
Cca02g01277 1114 CDD REC_hyHK_CKI1_RcsC-like 989 1106 - -
Cca02g01277 1114 MobiDBLite consensus disorder prediction 930 950 - -
Cca02g01277 1114 SMART HKATPase_4 519 676 IPR003594 -
Cca02g01277 1114 ProSiteProfiles Response regulatory domain profile. 988 1110 IPR001789 GO:0000160
Cca02g01277 1114 Gene3D - 390 469 - -
Cca02g01277 1114 PANTHER TWO-COMPONENT HISTIDINE KINASE 50 1108 - -
Cca02g01277 1114 Gene3D - 470 680 IPR036890 -
Cca02g01277 1114 Pfam Response regulator receiver domain 990 1107 IPR001789 GO:0000160
Cca02g01277 1114 ProSiteProfiles Histidine kinase domain profile. 410 676 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01277 Cca-Chr2 30900530 30906951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01277 28 1078 Histidine Kinase Gene Family AT2G47430 37.569 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca02g01277 HATPase_c 1.5e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01277 - - ccaj:109811957 1301.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01277 02 30900530 30906951 Cca02g01277 02 30900530 30906951 ECH