Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01276 ATGGAACAAGTTGTGTTGCTGGTTGATGATTTGAGATCACTTTCTAGGATTTCTCGCTGTAGAATATGTCATGAAGAAGAATTTGAGAGCTCCAAAACCTTGGAAGCTCCTTGTGCTTGTTCTGGAACAGTTAAGTTTGCCCATAGAGATTGCATTCAGACATGGTGCAATGAGAAAGGAAATACAACTTGTGAAATTTGTCTCCAGCAATATGAACCCGGGTATACAACAGTACCAAAGAAATCGCAAATAGCTGATGCAGCAATGACCATTAGGGATAGCTTGCAAATTTCAAGGATTGAACAAGAACCGTTAAACACAAGAATAGTGAGTATAGTTGAAGGAAACAATTACTCTGAATGCACGTATGCTGCAGATAGAAGCGCTGCTTGTTGTCGATCCCTGGCTTTAGCTTTTACACTCATCTTGCTTGTAAGACATCTTTTTGCAGTCCTTACAGAGGGAATGGAAGATTATCCATTTACAATTCTTACGGTGTTTTTACTAAGGGCCAGTGGAATCATTATACCCATGTTCATAGTTATTAAGACGATCGGGGCCATTCATAACAACATTAAGCGTCACCATCATCAGGATTCTGACGATGACTCATCGATATCTGATGGAGACGATGAAGAAAATGAGACACCAGATGATGAAATTTTAAGACATTCACAATCTTAG 684 0.3933 MEQVVLLVDDLRSLSRISRCRICHEEEFESSKTLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTTVPKKSQIADAAMTIRDSLQISRIEQEPLNTRIVSIVEGNNYSECTYAADRSAACCRSLALAFTLILLVRHLFAVLTEGMEDYPFTILTVFLLRASGIIIPMFIVIKTIGAIHNNIKRHHHQDSDDDSSISDGDDEENETPDDEILRHSQS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01276 227 SMART ringv_2 19 68 IPR011016 GO:0008270
Cca02g01276 227 MobiDBLite consensus disorder prediction 195 227 - -
Cca02g01276 227 SUPERFAMILY RING/U-box 19 72 - -
Cca02g01276 227 CDD RING_CH-C4HC3_MARCH 20 67 - -
Cca02g01276 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 77 IPR013083 -
Cca02g01276 227 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 224 - -
Cca02g01276 227 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Cca02g01276 227 Pfam Protein of unknown function (DUF3675) 73 185 IPR022143 -
Cca02g01276 227 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Cca02g01276 227 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Cca02g01276 227 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 224 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01276 Cca-Chr2 30890497 30893208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01276 20 67 C3H Transcription Factor Family AT2G37950 44.898 2.32e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01276 - - gmx:100797029 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01276 02 30890497 30893208 Cca02g01276 02 30890497 30893208 ECH
Cca03g02779 03 49163664 49165388 Cca02g01276 02 30890497 30893208 PCT