Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01271 ATGATGGAAGCGAGTTATTCTCCGCGAATGTTTGGCGGTGTTCGTTTCGTTCTCCGTGGCTTCAACCCCGTCGCCGAAAGACAGATCCGGTCGAAGCTTGTGAGTGGTGGTGGAGTTGACGTAGGGCAGTACGGTGGAAGTTGCACGCATGTCATTGTCGATAAGATTGCATATGACGATCCTCTGTGTGTTGCTGCTAGAAATGATCGGAAGACGCTCGTCACTGCATTGTGGGTCGATCACAGTGCTGATATTGGAATGCCCGTTGATGCTGCTTCGGTTATGTACAGGCCTCTTAAAGACTTGGACGGAATACCAGGCGCAAAAGATTTGATAATGTGCTTGACTGGTTATCTACGCCAGGATCGAGATGACATTATGACGATGGTTGGCCTGATGGGAGCACAGTTTTCTAAGCCATTGGTGGCAAACAAGGTTACTCATCTCATATGCTACAAATTTGAAGGAGAGAAGTATCTGCTTGCCAAGAGATTGAGCACAATAAAGCTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAGGAATGGATGATTCTTCCTGAAGACAAATATAACAAGAGTGGTTTTGAACTAGAGATGGAGGAACAGGCTAAGGATTCTGAGGAAGAGGCTGAAGATTATAAGCTGGGACAATCAGGAGGAAGCATTAGAAAACAAAGCCCCCTTAGTTTGAAATTTGGTATAGCTTCTACTCATGGATTCTTGGAATCAGTAAGAGAGGCATCAAATGCCTTACCAGAGTCTACTGGTCCACAGGTTTTGCCCAACGTCAATAATGGTGAAACCTCTTCAATCATTCCAGGAAATAGGAACAAATCTGATCAAGACTTGAGCTTTCATAATGTTGATGACTCAAAGGTTCAGGCTCCTGATGTTTCTAGACATTCTACACCATGTCAATTACCTGACAAATATGTAAAGACCAGTGATCCTATGAATGCTGATTTTTCAAAGGCACTTGGCTGCCAGGCATCTGGCCAGAAACCTCAACTGCATGATGACACCCCAGAGTCTAAGAAGTTGGTAAGTGACTTGAGATCAAATTCTGCGAGTGCTGCTGGAGTTGCACATTCAAATGAAAAGCTTAGTACAAGTTTTTCGAGGAAGAACCAGAGGGGATTTTCTCTCCCAAGGATCTTAGACGAAAGCTCTGGCAGAGAAGACACCAACTGTGAAAACAGTGAGGGTATCAAATCTACCAATGTTGAAGTTTCTGGCAAAGGAAATGATTTTGTTAAAGAAGATGAGCCAATTAGTTTATTGCCTCAAAAGAGGATCAATGAAGCTTCTTCTACTAAATTAAAATCAAGAAAGATGATCGCTGGCGCCATCTCATCAGCCAATGGTAAATCTCAAGGATATAAAGTGACGTCTCAGGTTGATCATCCACCTGTAGCTGACGACTATTTTTCTATCGGCAAAGATGGTATAAATAATTCAAACGCTTGCTTAGTTTCAAAACCTGTAGGTTCTACCTCTGACTCGCCGGCGTTTGATGAGCCTTTCTCAAGAAATGCAAGCCCAGAATCTGCTCCGTGCGATAATGTATATCATAATTCACCACAAACGGCTGTTCAGATGTTCAGTGTGTCTAAAGTTAATGGCAAGCTTGATGTCACAGGTTCTGGAATGCAACAAGTTGATGGTAATGAAGCAGAGCAACATAATGTCACTAAAAATCTTGGTTGTTCATCATCGGGAAACAAAAAGTCACATAATGTGCAATCCTCTGGTTGTACTAATTTGGATTTAAGCAACGAAGAAAGTATTAAACTGACTAGAAAATCACCCCGAAAGAAGTCAGTTGCCAAGAGATATTTGGGTTCTAAACTTAAAGTAGGTTCCACTGCTAGGCAGAAAAAATCATTTTCCTTGAATAAAACTATCTTGCAAGGTGAAGATGTAAATTTTTCTGGCGGAAGCAAGGAGACTGCAACTTGTGATGCGAAGATGCAACAGGGATGTCCCCAAATCCTTGATCTTAATAAACCAAAAGAGCAAGAAACAGTTAGTAAAAGTGCACAATATGCTGGTGACAAAACTGAGTTTTTGGATGATGAAACCGAGACTCCAGATGACAAATGTGAAGAGGAATTAGGAATAGCCCTTGAAGAATCAGTTCATCTTTCAAAGAAGCCAGACACAGTAACGAAAGAGGAGTCAGAAGCAATTTGCCCTACAACAAAATGTGAAGAGGCAATGCTTCCTAAGAAAGGCACAAATAAAACTGAAAAACAGAAACCATCTTCACTGGTAGTAAAGCATCAAGCAAGAAAACGTCCTGCTGGTAAAGCCAAGGCAACAGTTAATAAATATGTAGAGGATGCTGGAGACCGAACTGAGCTTTTGGATGATGAGACCGAGGCTCCAGATGACAAATGTGAATGTGAGTTAGGAATGGCACTGGATGAAGAATCGGTTCATCTTTCAAAAAAGCCAAGTACAGCAACAGAAGAGAAGTCAGAAGCAATTTGCCCTGCGACAAAATGTGAAGAGGCAATGCCTCCTAAGAGAGGCACAAATAAAGCTGAAAAACAGAAGCCATCTTCGCTGGTAGTAAAGCATCAAGCTAGTAAACGTCCTGCTGGTAAAGCCAAGGTTACAGTTGCCAAGGAATTATCGAAATCTAAAGTGGCAGTATCTGAGAAGATTCCTAATGAGACGGGAAATGAGCCAGAGATAGAAACCATGGAAGAAATGTCCCTTCCTGCTGANNNNNNNNNNTGCTGA 2751 0.4188 MMEASYSPRMFGGVRFVLRGFNPVAERQIRSKLVSGGGVDVGQYGGSCTHVIVDKIAYDDPLCVAARNDRKTLVTALWVDHSADIGMPVDAASVMYRPLKDLDGIPGAKDLIMCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYLLAKRLSTIKLVNHRWLEDCLKEWMILPEDKYNKSGFELEMEEQAKDSEEEAEDYKLGQSGGSIRKQSPLSLKFGIASTHGFLESVREASNALPESTGPQVLPNVNNGETSSIIPGNRNKSDQDLSFHNVDDSKVQAPDVSRHSTPCQLPDKYVKTSDPMNADFSKALGCQASGQKPQLHDDTPESKKLVSDLRSNSASAAGVAHSNEKLSTSFSRKNQRGFSLPRILDESSGREDTNCENSEGIKSTNVEVSGKGNDFVKEDEPISLLPQKRINEASSTKLKSRKMIAGAISSANGKSQGYKVTSQVDHPPVADDYFSIGKDGINNSNACLVSKPVGSTSDSPAFDEPFSRNASPESAPCDNVYHNSPQTAVQMFSVSKVNGKLDVTGSGMQQVDGNEAEQHNVTKNLGCSSSGNKKSHNVQSSGCTNLDLSNEESIKLTRKSPRKKSVAKRYLGSKLKVGSTARQKKSFSLNKTILQGEDVNFSGGSKETATCDAKMQQGCPQILDLNKPKEQETVSKSAQYAGDKTEFLDDETETPDDKCEEELGIALEESVHLSKKPDTVTKEESEAICPTTKCEEAMLPKKGTNKTEKQKPSSLVVKHQARKRPAGKAKATVNKYVEDAGDRTELLDDETEAPDDKCECELGMALDEESVHLSKKPSTATEEKSEAICPATKCEEAMPPKRGTNKAEKQKPSSLVVKHQASKRPAGKAKVTVAKELSKSKVAVSEKIPNETGNEPEIETMEEMSLPAXXXXC 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01271 916 MobiDBLite consensus disorder prediction 249 282 - -
Cca02g01271 916 Gene3D BRCT domain 99 219 IPR036420 -
Cca02g01271 916 MobiDBLite consensus disorder prediction 742 772 - -
Cca02g01271 916 MobiDBLite consensus disorder prediction 247 347 - -
Cca02g01271 916 Gene3D BRCT domain 2 94 IPR036420 -
Cca02g01271 916 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Cca02g01271 916 MobiDBLite consensus disorder prediction 742 758 - -
Cca02g01271 916 MobiDBLite consensus disorder prediction 388 409 - -
Cca02g01271 916 SMART BRCT_7 106 183 IPR001357 -
Cca02g01271 916 SMART BRCT_7 8 86 IPR001357 -
Cca02g01271 916 SUPERFAMILY BRCT domain 10 91 IPR036420 -
Cca02g01271 916 Pfam twin BRCT domain 111 175 IPR001357 -
Cca02g01271 916 MobiDBLite consensus disorder prediction 197 221 - -
Cca02g01271 916 MobiDBLite consensus disorder prediction 838 874 - -
Cca02g01271 916 MobiDBLite consensus disorder prediction 502 525 - -
Cca02g01271 916 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 883 IPR044254 -
Cca02g01271 916 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Cca02g01271 916 MobiDBLite consensus disorder prediction 565 585 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01271 129 234 Core DNA Replication Machinery Family AT4G02110 65.421 5.99e-36 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01271 K10728 - gmx:100799144 1372.45