Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01268 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTTGGGTTGAAGAAGGGTAGGTGGACAACAGAAGAGGATGAGATCCTGTCAAAATATATTCAGGCCAATGGAGAAGGTTCTTGGAGGTCATTGCCTAAGAATGCAGGATTATTGAGGTGCGGGAAGAGTTGCAGACTTAGATGGATCAACTATTTGAGAGCTGACCTCAAAAGAGGGAACATTACTGCTGAAGAGGAAAATACCATCGTTAAGTTGCACTCTTCTTTTGGCAACAGGTGGTCTTTGATAGCAAGTCATTTGCCAGGAAGAACCGACAACGAGATAAAAAACTACTGGAACTCTCACCTCAGCAGAAAAATTTACAGTTTCCCGAAGCAAGCAGGTGCAGTGGTCATGGACACAGCCAAGGCAGCAACACTTATTCCTCCGAAGCGCAAAGGTGGTAGAACAAGCCGTTGGGCCATGAAGAGGAACAAAAGCTACACCCAAAACGATACACCCCAGAGGCCAACACAGAGTTTCACGCAACACAACAATGACACAGCCGCAGTTCCGCCGCTGGAGGCTGACGTGGCAGAGGTTGGCGAGAGGAGAAGGGAGGTGGTGGAGGGTGTGGAAGAAAGTTCCGATGACGATATATTAGGACTGCGTAAAATGGAGGGCATTAATGAGGGTAGTGGGGCGTTGGGTTTCAGTGACGTGTTGGAAACATGTGGGGTCCGGAACTTAAGTGAAGAAAGAGACGTGATGGGTGTTACGTGTCACAACAAAATGGCATCAAGTGAGAGTAGCGTGAACGGCGACAGTGGAGGAGAATGGTATTCTTGCTCTTCCACGACCTTGGCTTCGGAAGAAAGCTGGGATTGGGAGAGCGTGATAGAGTTTAATAAGATTTCTGAGTCCGAAGCTTATGACTGGGAGCACCAAGAGAAACTCCTCACTTGGCTGTGGGAAGATGATGATTGGGAAACCGATTGCAAGACAAATTCTCAGATGCAAAACGACATGGTTGCCTGGTTTCTCTCTTGA 1017 0.4779 MGRAPCCEKVGLKKGRWTTEEDEILSKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEENTIVKLHSSFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYSFPKQAGAVVMDTAKAATLIPPKRKGGRTSRWAMKRNKSYTQNDTPQRPTQSFTQHNNDTAAVPPLEADVAEVGERRREVVEGVEESSDDDILGLRKMEGINEGSGALGFSDVLETCGVRNLSEERDVMGVTCHNKMASSESSVNGDSGGEWYSCSSTTLASEESWDWESVIEFNKISESEAYDWEHQEKLLTWLWEDDDWETDCKTNSQMQNDMVAWFLS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01268 338 MobiDBLite consensus disorder prediction 187 202 - -
Cca02g01268 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca02g01268 338 SMART sant 13 63 IPR001005 -
Cca02g01268 338 SMART sant 66 114 IPR001005 -
Cca02g01268 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca02g01268 338 CDD SANT 16 61 IPR001005 -
Cca02g01268 338 MobiDBLite consensus disorder prediction 152 178 - -
Cca02g01268 338 Gene3D - 13 66 - -
Cca02g01268 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca02g01268 338 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Cca02g01268 338 PANTHER MYB TRANSCRIPTION FACTOR 2 330 - -
Cca02g01268 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca02g01268 338 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 330 - -
Cca02g01268 338 CDD SANT 71 112 IPR001005 -
Cca02g01268 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca02g01268 338 Gene3D - 71 116 - -
Cca02g01268 338 MobiDBLite consensus disorder prediction 152 202 - -
Cca02g01268 338 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01268 Cca-Chr2 30750538 30756585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01268 1 152 MYB Transcription Factor Family AT2G47460 73.585 3.64e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g01268 Myb_DNA-binding 1.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01268 K09422 - gmx:100793350 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01268 02 30750538 30756585 Cca02g01268 02 30750538 30756585 ECH
Cca03g02788 03 49252100 49256385 Cca02g01268 02 30750538 30756585 PCT