Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01258 ATGATGGCAAAAGCAAATGCAAAGAAcacctccacctccacctccaccgcgctccaccctccTTACTTCGACATGATCGCGGATGCAATAGCGTCGTTAAAAGAACGCACGGGTTCGAGCCAGCCAGCCATAGCGAAGTTCATCGAGGAGAAGCACAGCAAAGTGCTTCCTTCCAACTTCAGGAAGCTTCTCTCCCTCCAGTTGAAGAAGTTGGTGAAATCGGAGAAGCTCTTTAAGGTTAAAAACTCGTACAAGCTTTCTTCTTCACCCAAGGACAAACAAACCGAAACCGCGCCTGAGAAGACCAAGAGGCTGAGTCAAGTGAAGACGCCCGAAGCCCTCAAGAAGAAAGCCCCCAACAAGAAGAAATCTGTGAAGCGTTTGAGTCAGGTCAAGACCCCTGAGGCCTTGAAGAAGAAAAAGCCCAATTTGACCCCCAATAACCGCAAGACTGCTACTCCCAACCCTTCCAGGCCCAACTTGAGATCTAGGAAATGA 498 0.4478 MMAKANAKNTSTSTSTALHPPYFDMIADAIASLKERTGSSQPAIAKFIEEKHSKVLPSNFRKLLSLQLKKLVKSEKLFKVKNSYKLSSSPKDKQTETAPEKTKRLSQVKTPEALKKKAPNKKKSVKRLSQVKTPEALKKKKPNLTPNNRKTATPNPSRPNLRSRK 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01258 165 CDD H15 19 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca02g01258 165 SUPERFAMILY "Winged helix" DNA-binding domain 16 99 IPR036390 -
Cca02g01258 165 PANTHER HISTONE H1 4 152 - -
Cca02g01258 165 PRINTS Histone H5 signature 5 26 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca02g01258 165 PRINTS Histone H5 signature 32 49 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca02g01258 165 PRINTS Histone H5 signature 110 124 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca02g01258 165 PANTHER HISTONE H1 4 152 - -
Cca02g01258 165 MobiDBLite consensus disorder prediction 146 165 - -
Cca02g01258 165 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 18 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca02g01258 165 Pfam linker histone H1 and H5 family 19 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca02g01258 165 Gene3D - 14 98 IPR036388 -
Cca02g01258 165 SMART h15plus2 16 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca02g01258 165 MobiDBLite consensus disorder prediction 82 165 - -
Cca02g01258 165 MobiDBLite consensus disorder prediction 94 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01258 Cca-Chr2 30620647 30621598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01258 20 97 Single Myb Histone (SMH) Gene Family AT1G72740 36.471 6.30e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01258 K11275 - gmx:100306187 184.496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01258 02 30620647 30621598 Cca02g01258 02 30620647 30621598 ECH