Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01254 ATGGCGGCATTGTCGTTTTCAGTGGCATCCGTGGTGGAAGACGTGCTTCAACAGCACGGTACTCGCCTCAAAGATCTTGATTTGGAATCTAGAAAAGCAGAAGAAGCTGCATTCAGAAGATATGACGCAGCTGGGTGGCTGAGAAAAATGGTTGGAGTTGTTGCAGCTAAAGATTTGCCAGCAGAACCCTCTGAGGAAGAGTTTAGGCTTGGTTTGAGAAGTGGGATCATTCTATGTAATGTTCTTAATAAGGTTGAACCTGGAGCTGTACCCAAGGTTGTGGAGAGTCCTATTGATTCTGCACAAATCCCTGATGGAGCACCATTATCGGCATTTCAGTATTTCGAAAACGTGAGGAACTTTCTGGTGGCTGTACAGGAAATTGGAATTCCTACCTTTGAGGCATCTGATCTGGAACAAGGAGGAAAATCAGCCAGGATTGTGAACAGCGTCTTAGCCCTCAAGTCCTATAGTGAATGGAAACAGACCGGGGCTAATGGTGTGTGGAAATTTGGTGGAACTATCAAACCAACAATCTCTGCAAAATCATTTGTGAGAAAAAACTCTGAGCCATTTACTAATTCCTTGTCGAGGAACTCGTCCATCAATGAAAAATCCATGACTGCTCTTACTTCTGATGTTGAGTCTAATAAAATGTCTGGGTCTCATTCTTTGAGTATGCTTGTTCGTGCAATACTATTAGATAAGAAGCCGGAAGAAGTTCCAACGTTGGTTGAATCTGTCTTGAATAAGGTCGTAGAGGAGTTTGAGCATCGCATTGCAAGCCAGGGTGAACAGACAAGAATTTCCCGAAGTGCTGTGTCCCAAAGCAATGGATCTGTATCAAAGTTTGTTATGGCAGATAAAAAGACGGATAACAAGATTCCTGTGGTAACAAAGAAAGACGGGTTCCTCCAAAAAACCCGTGTTGATGATGAGGAATCAAAAAGACAACTTCTGAAGCAGCAAATGCTCTTTGATCAACAACATAGAGATATTCAAGAACTAAAGCATACAATTCACACCACCAAAGCTGGTATGCAGTTCCTGCAAATGAAGTTTCACGAGGAGTTCTTCAATCTAGGCAGGCATGTTCATGGCTTAGCTCATGCTGCTTCTGGATATCATAGAGTACTTGAAGAGAATCGCAAACTATACAATCAAGTCCAAGATCTTAAGGGAAGTATTAGGGTGTACTGTCGAGTAAGACCCTTCTTATCTGCACAATCAAATTATTCAAGCACAGTGGATAATATTGAAGATGGAACTATCACAATTAGTATTCCTTCAAAGAATGGGAAAGGGTGCAGATCTTTCAACTTCAACAAAGTCTTTGGACCTTCTGCATCCCAAGCGGAGGTCTTCTCCGATATGCAGCCACTCATTAGGTCTGTTCTTGATGGTTACAATGTTTGCATATTTGCTTATGGCCAAACAGGATCAGGAAAAACTTTCACTATGACTGGACCGAAAGAGATCACAGAGAAAAGCCAAGGTGTAAATTACAGGGCTCTAAGTGATTTGTTTCTTACAGCAGATCAAAGAAGGGACACTTTTTGTTATGATGTGTCTGTTCAAATGATTGAGATTTATAACGAGCAAGTCAGAGATCTATTGGTTATTGATGGATCAAACAAAAGATTAGAAATTCGTAGTAATTCTCATAGAGGGCTCAGTGTACCAGATGCAAGCCTAGTCCCAGTATCCTCAACAAGAGACGTTATTGAACTAATGAACCTGGGCCAAAGAAATCGTGCAGTTGGAGCAACGGCCCTTAATGATCGTAGTAGCCGATCACACAGTTGCTTAACTGTTCATGTTCAAGGAAGAGACTTGACATCTGGAACTATTCTACGTGGATGCATGCATCTGGTTGACTTGGCAGGAAGTGAGAGAGTTGACAAATCTGAGGCCACAGGAGATAGGCTGAAAGAGGCACAGCATATTAACAAGTCTCTTTCAGCTTTGGGCGATGTCATTGCTTCCCTTGCTCAGAAAAACCAACATGTCCCTTACAGAAATAGCAAACTCACACAGTTACTCCAAGACTCGCTTGGAGGACAGGCCAAGACACTAATGTTTGTTCACGTAAGTCCAGAGGCCGATGCTATTGGAGAAACAATTAGCACCTTAAAATTTGCAGAAAGAGTTGCTACGGTTGAACTTGGTACTGCTCGAGTAAACAAGGATGGGGCAGATGTCAAAGAGCTCAAAGAACAGATAGCCAGTCTTAAGGCAGCATTGGCAAGAAAGGAAGGTGAATCAGAACATTCTTTATCAGGAAGCTCCGAAAAATATAAGACAATGGCTAGTGAGCTATCACCTTATCGTGCAAACCAACGGGGAACAGATATTGTGAGTGATCTCCTAGGGTGCCGGCAGCCAATGGTTGATGTAGGCAACCTAGAACTTCACAGTAATAGCGCATTGAGACAAAAAACTCAGAGCTATGATTTTGATGAGATGTCAACGAATTCACCTCCCTGGCCCCCAGTGAATAGTCCAGGACAAAACTACAGGGAAGATGACAAAGAAACTGGTTCAGGAGAGTGGGTTGATAAAGTCATGGTAAACAAACTAGATGCAAACAAAACTGAGAACATCTTAGGGTGTTGGGAAGCAGACACTGGGAACTTATCCGAGGCCTTTTATCAGAAATATCTCCAAGATTCTTCCAAAATATACTCAGAAAGATCCTACAACATGTTCATGGGAGGGAACCAGTTTAACATTGCTGGTTCAGATGGAATGGATGATCTTGATGATGCAACCACTGATTCCTCAGAACCTGACTTGCTTTGGCAATTTAATCATTCCAAACTTACCACCAGCATAGCCAATGGTAATGGATCAAAGGCTCGGAAGCCTGTCTCAAAACCCACAAATAGCACAGGATTGAGCAAGAGTAATATTCATTCTTCTCTTGGTCCTTCTCCTTCACGGAAACAACCAACCGGTGTAGTCTCACATCGAACAGGAAGACATCCAGCTCCAGTTGACATGAAACGTAAAACTGGGAGTAGAAAGTAA 3030 0.4248 MAALSFSVASVVEDVLQQHGTRLKDLDLESRKAEEAAFRRYDAAGWLRKMVGVVAAKDLPAEPSEEEFRLGLRSGIILCNVLNKVEPGAVPKVVESPIDSAQIPDGAPLSAFQYFENVRNFLVAVQEIGIPTFEASDLEQGGKSARIVNSVLALKSYSEWKQTGANGVWKFGGTIKPTISAKSFVRKNSEPFTNSLSRNSSINEKSMTALTSDVESNKMSGSHSLSMLVRAILLDKKPEEVPTLVESVLNKVVEEFEHRIASQGEQTRISRSAVSQSNGSVSKFVMADKKTDNKIPVVTKKDGFLQKTRVDDEESKRQLLKQQMLFDQQHRDIQELKHTIHTTKAGMQFLQMKFHEEFFNLGRHVHGLAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSAQSNYSSTVDNIEDGTITISIPSKNGKGCRSFNFNKVFGPSASQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKEITEKSQGVNYRALSDLFLTADQRRDTFCYDVSVQMIEIYNEQVRDLLVIDGSNKRLEIRSNSHRGLSVPDASLVPVSSTRDVIELMNLGQRNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGTILRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNQHVPYRNSKLTQLLQDSLGGQAKTLMFVHVSPEADAIGETISTLKFAERVATVELGTARVNKDGADVKELKEQIASLKAALARKEGESEHSLSGSSEKYKTMASELSPYRANQRGTDIVSDLLGCRQPMVDVGNLELHSNSALRQKTQSYDFDEMSTNSPPWPPVNSPGQNYREDDKETGSGEWVDKVMVNKLDANKTENILGCWEADTGNLSEAFYQKYLQDSSKIYSERSYNMFMGGNQFNIAGSDGMDDLDDATTDSSEPDLLWQFNHSKLTTSIANGNGSKARKPVSKPTNSTGLSKSNIHSSLGPSPSRKQPTGVVSHRTGRHPAPVDMKRKTGSRK 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01254 1009 Gene3D Kinesin motor domain 390 761 IPR036961 -
Cca02g01254 1009 Gene3D - 24 183 IPR036872 -
Cca02g01254 1009 SMART ch_5 39 157 IPR001715 GO:0005515
Cca02g01254 1009 Coils Coil 727 754 - -
Cca02g01254 1009 ProSiteProfiles Kinesin motor domain profile. 395 720 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca02g01254 1009 Coils Coil 16 36 - -
Cca02g01254 1009 Pfam Kinesin motor domain 401 719 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca02g01254 1009 MobiDBLite consensus disorder prediction 819 847 - -
Cca02g01254 1009 MobiDBLite consensus disorder prediction 995 1009 - -
Cca02g01254 1009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 752 IPR027417 -
Cca02g01254 1009 ProSiteProfiles Calponin homology (CH) domain profile. 37 159 IPR001715 GO:0005515
Cca02g01254 1009 SUPERFAMILY Calponin-homology domain, CH-domain 42 170 IPR036872 -
Cca02g01254 1009 CDD KISc_C_terminal 393 722 - -
Cca02g01254 1009 SMART kinesin_4 393 728 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca02g01254 1009 Pfam Calponin homology (CH) domain 41 159 IPR001715 GO:0005515
Cca02g01254 1009 PRINTS Kinesin heavy chain signature 468 489 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca02g01254 1009 PRINTS Kinesin heavy chain signature 590 607 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca02g01254 1009 PRINTS Kinesin heavy chain signature 621 639 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca02g01254 1009 PRINTS Kinesin heavy chain signature 670 691 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca02g01254 1009 PANTHER KINESIN-LIKE PROTEIN KLP-3 2 1006 - -
Cca02g01254 1009 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 2 1006 - -
Cca02g01254 1009 MobiDBLite consensus disorder prediction 944 987 - -
Cca02g01254 1009 MobiDBLite consensus disorder prediction 944 1009 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01254 Cca-Chr2 30491671 30499054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01254 383 720 Calmodulin-binding Proteins AT5G65930 44.220 9.01e-79 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01254 K10406 - gmx:100801279 1798.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01254 02 30491671 30499054 Cca02g01254 02 30491671 30499054 ECH
Cca02g01254 02 30491671 30499054 Cca03g02896 03 50279142 50289992 ECH