Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01251 aTGGTGTCTCTGAAGCTTCAGAAGCGGCTTGCCGCTAGCGTTCTCAAATGTGGAAGAGGCAAGGTTTGGCTTGACCCTAACGAAGTCAATGAAATCTCCATGGCCAATTCTCGTCAAAACATAAGGAAATTGGTTAAGGATGGGTTCATTATCAGGAAGCCAACTAAGATTCACTCCCGCTCCCGTGCTCGCCGTATGAAGGAGGCCAAGAGGAAGGGACGCCACTCTGGATATGGTAAGCGTAAGGGTACAAGAGAGGCAAGGCTCCCCACCAAAATTCTTTGGATGAGGAGGATGCGTGTCCTCCGACGTTTGCTTCGCAAATACAGGGAAGCGAAGAAGATTGACAAGCATATGTACCATGATATGTACATGAAGGTAAAGGGTAATGTGTTCAAAAACAAGAGAGTCTTGATGGAGAGCATACACAAGTCAAAGGCTGAGAAGGCAAGAGAGAAGACTTTATCTGACCAGTTTGAGGCCAAGAGGGCAAAGAACAAGGCAAGCAGGGAAAGGAAAATTGCTCGGAGGGAAGAGCGATTGGCTCAAGGTCCTGGAGAGAAGCCATCAGCGGCCCCAAGTGCTCCATCTGCCACAGCTTCCCAGCCAGCCCAAGCATCAAAGAAATCAAAGAAGTGA 639 0.4867 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKPSAAPSAPSATASQPAQASKKSKK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01251 212 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Cca02g01251 212 Gene3D - 57 188 - -
Cca02g01251 212 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Cca02g01251 212 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Cca02g01251 212 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Cca02g01251 212 MobiDBLite consensus disorder prediction 57 79 - -
Cca02g01251 212 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Cca02g01251 212 MobiDBLite consensus disorder prediction 194 212 - -
Cca02g01251 212 PANTHER RIBOSOMAL PROTEIN L19 1 212 - -
Cca02g01251 212 MobiDBLite consensus disorder prediction 149 184 - -
Cca02g01251 212 PANTHER 60S RIBOSOMAL PROTEIN L19 1 212 IPR039547 GO:0003723|GO:0003735|GO:0022625
Cca02g01251 212 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Cca02g01251 212 MobiDBLite consensus disorder prediction 57 85 - -
Cca02g01251 212 MobiDBLite consensus disorder prediction 149 212 - -
Cca02g01251 212 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01251 Cca-Chr2 30458656 30460781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01251 1 212 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 83.491 2.19e-127 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01251 K02885 - gmx:100527501 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01251 02 30458656 30460781 Cca02g01251 02 30458656 30460781 ECH