Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01250 ATGTGTGGCGGTGCCATCATCGCTGACTTCATACCCCGCCGCGGAGGCCGCCGCCTCACCGCCTCCGAGCTCTGGCCAAACTCATTCGCCGCCAAGGACGACATCCATTACGCCAATCCACAATCCTCGACTCCCAAAGCGAGGGAGCAAGTGGAGAAGCCAGTGAAGAGGCAGAGGAAGAATCTGTACCGTGGGATCCGCCAGCGTCCCTGGGGCAAATGGGCCGCCGAGATTCGCGATCCAAGAAAAGGGGTTCGTGTCTGGCTCGGTACCTTCAACACCGCCGAAGAAGCTGCAAGGGCCTACGACCGCGAAGCCCGAAAAATCCGCGGCAAAAAGGCCAAGGTCAATTTCCCCAACGAGGAAGACCAATTCTCCATGCAACCCCCTAATCCAACTCCCCCGCTTCCTTTTCACAACCCTCCCCTCTATCACCACCACTACCCTTGTGACCTCAACGATGCCCCCAAAAGCCTCAACTTTGACTTCGGTTACGATCTCAACCACGCTGGGGTATTTCCTTCCAATGCTGACAACGTTGCTGCTTCCGCCGATGAACATTCTGGCCTGGCGTCGGGGTCGGAGGGTGCTTATTCCACCACGGACTTCATGGGCTCCGCTCCGAACGAGAGCGCTTATTTGGGTGGCGCGGCGCTTGCCAAAGAGAAAGAGACGCACGTGATTGGAGGTGAAGAGGAGAAGAACAAAGTGCTGGAGCTTTCTGAGGAGCTGATGGCGTACGAGAATTACATGAAGTTTTATCAGATTCCGTACTATGATGGACAATCCACGCCACCGAGTCATGTTCAGGAAAGCCTTGTCGGGGATCTCTGGAGTTTCGATTAA 846 0.5579 MCGGAIIADFIPRRGGRRLTASELWPNSFAAKDDIHYANPQSSTPKAREQVEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEEDQFSMQPPNPTPPLPFHNPPLYHHHYPCDLNDAPKSLNFDFGYDLNHAGVFPSNADNVAASADEHSGLASGSEGAYSTTDFMGSAPNESAYLGGAALAKEKETHVIGGEEEKNKVLELSEELMAYENYMKFYQIPYYDGQSTPPSHVQESLVGDLWSFD 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01250 281 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Cca02g01250 281 Pfam AP2 domain 63 111 IPR001471 GO:0003700|GO:0006355
Cca02g01250 281 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Cca02g01250 281 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Cca02g01250 281 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Cca02g01250 281 CDD AP2 63 120 IPR001471 GO:0003700|GO:0006355
Cca02g01250 281 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
Cca02g01250 281 PANTHER DNA-BINDING DOMAIN 39 259 IPR044808 GO:0003700|GO:0009873
Cca02g01250 281 PANTHER EREBP TRANSCRIPTION FACTOR 39 259 - -
Cca02g01250 281 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Cca02g01250 281 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01250 Cca-Chr2 30437403 30439075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01250 1 120 AP2-EREBP Transcription Factor Family AT3G16770 57.353 8.23e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca02g01250 AP2 8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01250 K09286 - gmx:100780763 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01250 02 30437403 30439075 Cca02g01250 02 30437403 30439075 ECH