Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01246 ATGAACAACCTCACACTTGCATCCATTCTGACCGTGATTTCCGCGCTACTCTTGGTAGGAACTCCTTTCACTCTCACCCCAGAAAAACACCTCCATTTCCAAAAGCACATACAAGTAGCCCAATCCACATGCCAAGGAACACTCTACCCCGACCTATGTGTCTCAACCCTTGCCACATTCCCAGATCTAGCCTCAAAATCCGTCCCACAAGTGATATCCTCAGTGGTCAACCACACCATGCACGAGGTGAGATCATCATCCTACAACTGCAGCGGCCTCAGAAAGAACCTCAGAAATCTCAACTCACTTGACCAAAGAGCTCTCGACGACTGTCTCAAACTCTTTGATGACACCACCGTGGAGCTCAGAACCACCATCGACGATCTCTCCAACACCACCATAGGGTCCAAGCGCCACCACGACTTGCAGACTCTGCTGAGCGCAGCAATGACCAACTTGTACACGTGCCTCGATGGCTTCGCTTACAGCAAAGGAAAAGTGAGGGACAAGTTCGAGGAGAAGCTGCTTGAGATATCGCATCACGTTAGCAACTCGTTGGCCATGCTGAAGAAAGTGCCTGGAATGAAAAAAGCAACGTCGAAATCTGAGGTGTTCCCTGAATATGGAAAGATGAAAAAGGGGTTCCCCTCGTGGCTTTCCTCCAATGACCGAAAGCTTCTCCAAGGTTCTGTGAATGAGACCAAGTTCGATCTCGTCGTTGCCAAAGATGGCACTGGAAATTTCACCACTATAGGGGAAGCACTCGCTGTGGCTCCCAACTCCAGCACAACCAGGTTTGTGATACACATAAAGGCGGGGGCATACTTGGAGAATGTGGAAGTAATCAGGAAGAAGACCAATTTGATGTTTGTTGGAGACGGGATTGGAAAGACAGTGGTGAAAGGCAGTAGGAATGTTGTGGACGGGTGGACCACTTTTCAATCAGCTACTGTTGCTGTTGTGGGAGCGGGATTCATAGCGAAGGGTATAACCTTTGAGAACTCAGCAGGACCCGAGAAACACCAAGCTGTGGCCCTAAGAAGTGGTGCTGACTTCTCAGCTTTCTACCAATGCAGTTTTGTTGGCTACCAAGACACTCTCTACGTCCATTCCCTACGCCAATTCTATCGTGAATGCGACATTTATGGCACTGTAGACTTCATTTTCGGCAATGCAGCAGTGGTCTTCCAAAACTGCAACTTATACGCACGCAAGCCGAACCAAAACCAAAAGAACCTTTTCACTGCACAAGGGAGAGAAGACCCTAACCAAAACACTGGCATATCCATCTTAAACTGCAAGGTTGCAGCTGCTGCAGATTTGATCCCAGTCAAAACCTCGTTCAAGAGCTACCTAGGACGTCCTTGGAAAATGTACTCTAGGACTGTTTTTCTAAAATCCTACATGGAGGATCTGATTGAGCCAGCAGGGTGGTTGGAATGGAATGATACATTTGCATTGGATACATTGTATTATGGGGAGTACATGAATCGAGGTCCTGGTTCAAACACAAGTGGTAGAGTTACGTGGCCAGGTTATAGGGTCATTAACAGTTCTACTGAGGCAAGCCAATTCACTGTTGGAGAGTTTATTCAAGGCAATGATTGGTTGAACAGCACTGGTATTCCATTCTTCTCTGGTTTGAGTTGA 1650 0.4752 MNNLTLASILTVISALLLVGTPFTLTPEKHLHFQKHIQVAQSTCQGTLYPDLCVSTLATFPDLASKSVPQVISSVVNHTMHEVRSSSYNCSGLRKNLRNLNSLDQRALDDCLKLFDDTTVELRTTIDDLSNTTIGSKRHHDLQTLLSAAMTNLYTCLDGFAYSKGKVRDKFEEKLLEISHHVSNSLAMLKKVPGMKKATSKSEVFPEYGKMKKGFPSWLSSNDRKLLQGSVNETKFDLVVAKDGTGNFTTIGEALAVAPNSSTTRFVIHIKAGAYLENVEVIRKKTNLMFVGDGIGKTVVKGSRNVVDGWTTFQSATVAVVGAGFIAKGITFENSAGPEKHQAVALRSGADFSAFYQCSFVGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYARKPNQNQKNLFTAQGREDPNQNTGISILNCKVAAAADLIPVKTSFKSYLGRPWKMYSRTVFLKSYMEDLIEPAGWLEWNDTFALDTLYYGEYMNRGPGSNTSGRVTWPGYRVINSSTEASQFTVGEFIQGNDWLNSTGIPFFSGLS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01246 549 Pfam Pectinesterase 237 534 IPR000070 GO:0030599|GO:0042545
Cca02g01246 549 Gene3D - 231 548 IPR012334 -
Cca02g01246 549 PANTHER PECTINESTERASE 24 545 - -
Cca02g01246 549 SMART PMEI_2 35 188 IPR006501 GO:0004857
Cca02g01246 549 TIGRFAM PME_inhib: pectinesterase inhibitor domain 14 191 IPR006501 GO:0004857
Cca02g01246 549 CDD PMEI-like_3 42 194 - -
Cca02g01246 549 PANTHER PECTINESTERASE 24 545 - -
Cca02g01246 549 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 194 IPR035513 -
Cca02g01246 549 SUPERFAMILY Pectin lyase-like 235 547 IPR011050 -
Cca02g01246 549 Pfam Plant invertase/pectin methylesterase inhibitor 41 188 IPR006501 GO:0004857
Cca02g01246 549 ProSitePatterns Pectinesterase signature 2. 381 390 IPR033131 -
Cca02g01246 549 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 193 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01246 Cca-Chr2 30387239 30392859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01246 64 544 Carbohydrate Esterase AT4G02320 57.287 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01246 K01051 - gmx:100802881 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01246 02 30387239 30392859 Cca02g01246 02 30387239 30392859 ECH
Cca03g02810 03 49462033 49464224 Cca02g01246 02 30387239 30392859 PCT
Cca02g01246 02 30387239 30392859 Cca03g02809 03 49443085 49448313 PCT