Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01245 ATGGCCAACACTAAGTCACGCAATACGATTCTCATCATCCTCTTCCTATCCTCGTTATTCGTATCTCAAGCATTCGAAGACACCCGCGTCTCTCCCAGAACCATATGCAAATCCACCCCAGACCCTTCTTATTGCAGTTCCGTGCTCCCACCCCAAAACGGCAGCGTTTACCACTACGGGAGGTTCTCCGTCAGAAAGTCGCTGTCCCAAGCCACCACTTTCTTAAACTTAGTCAACAAATATCTGAAACGCCGCTCCTCTCTCTCGAGCGCCGCAATCCACGCGCTCCAAGATTGCCAAACCCTCGCCGAGCTCAACGTGGATTTTCTCTCGACTTCCTTCCAAACGGTCAACAAAACAACGCCATTCCTACCCACTTCGGAAGCCGACGACATTCAAACCCTCCTCAGCGCCATTCTCACCAACCAACAAACCTGCTTAGAAGGCCTTCAACTTCAACCCAACGCCTCCCTCACCCACCGACTCTCCCTTCCGCTTTCCAACGACACCAAGCTCTACACCGTCTCTCTCGCGCTCTTCACAAAGGGATGGCTTCCCCACCACGCTAACGTCACCGCCTTTCACCCCACCTCCACCCACCTCTACGACTCCGTCACCCGGAGGAAGCTGCTTCCGGCCGCCGTGGCTGACGAGGTTAAGGTGAAAGACATCGTGACGGTGGCCAAAGATGGCAGCGGAAACTTCACCACCATCAGCGACGCCATTGCCGCGGCGCCCAACAAGTCCTCGTCGTCGGCGGGGTACTTTCTGATCTACGTCAGCGCGGGTGTTTACGAGGAAAACGTGTCCATTGATAAGAAGAAGACGTATTTGATGATGATTGGAGATGGCATCAATCAAACAATTATTACCGGGAATCGCAGTGTTGTTGATGGATGGACAACTTTTAAGTCAGCCACCTTTGCGGTGGTTGGCGCGGGATTCGTGGGTGTGAACATGACTATCCGCAACACCGCGGGGGCAGAGAAGCACCAAGCGGTGGCACTTCGCAACGGCGCAGATCTGTCGACGTTCTACAGGTGCAGCTTCGAGGGGTACCAGGACACGCTGTACGCGCATTCCCTGCGACAATTCTACAGAGAATGCGACATCTACGGCACGGTGGATTTCATCTTCGGAAACGCTGCGGCTGTGTTCCAAAACTGCAACATGTACCCTCGGCTTCCGATGAGTGGGCAATTCAACGCCATCACCGCACAGGGCCGAACCGACCCCAACCAAAACACGGGCACTTCCATCCACAACTGCACAATTAGAGCAGCCGATGATTTGGCTGCCAACCTAAATGCCGCTGAAACTTATCTGGGAAGGCCTTGGAAAAACTACTCGAGGACGGTTTACATGCAGAGCTTTATAGACAGTGTTGTCGATCCTGCTGGGTGGCGCCAATGGGACGCTGATTTTGCTTTGACCACTTTGTACTATGCCGAGTTTAACAACACCGGACCTGGATCCACCACTGCTAACAGAGTCACGTGGCAGGGTTACCACGTCATTAATGCCACCGATGCTGCTAATTTTACCGTCTCTAACTTCTTGCTTGGAGATAACTGGCTACCCCAGACCGGAGTGCCTTTCGCCAGTAACTTCATATAG 1617 0.5331 MANTKSRNTILIILFLSSLFVSQAFEDTRVSPRTICKSTPDPSYCSSVLPPQNGSVYHYGRFSVRKSLSQATTFLNLVNKYLKRRSSLSSAAIHALQDCQTLAELNVDFLSTSFQTVNKTTPFLPTSEADDIQTLLSAILTNQQTCLEGLQLQPNASLTHRLSLPLSNDTKLYTVSLALFTKGWLPHHANVTAFHPTSTHLYDSVTRRKLLPAAVADEVKVKDIVTVAKDGSGNFTTISDAIAAAPNKSSSSAGYFLIYVSAGVYEENVSIDKKKTYLMMIGDGINQTIITGNRSVVDGWTTFKSATFAVVGAGFVGVNMTIRNTAGAEKHQAVALRNGADLSTFYRCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNMYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRAADDLAANLNAAETYLGRPWKNYSRTVYMQSFIDSVVDPAGWRQWDADFALTTLYYAEFNNTGPGSTTANRVTWQGYHVINATDAANFTVSNFLLGDNWLPQTGVPFASNFI 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01245 538 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 154 IPR006501 GO:0004857
Cca02g01245 538 SMART PMEI_2 27 179 IPR006501 GO:0004857
Cca02g01245 538 Pfam Pectinesterase 225 523 IPR000070 GO:0030599|GO:0042545
Cca02g01245 538 SUPERFAMILY Pectin lyase-like 222 534 IPR011050 -
Cca02g01245 538 Gene3D - 218 537 IPR012334 -
Cca02g01245 538 CDD PMEI-like_3 34 184 - -
Cca02g01245 538 Pfam Plant invertase/pectin methylesterase inhibitor 33 179 IPR006501 GO:0004857
Cca02g01245 538 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 182 IPR035513 -
Cca02g01245 538 ProSitePatterns Pectinesterase signature 2. 371 380 IPR033131 -
Cca02g01245 538 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 182 IPR035513 -
Cca02g01245 538 PANTHER PECTINESTERASE 19 536 - -
Cca02g01245 538 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 19 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01245 Cca-Chr2 30377708 30380058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01245 11 538 Carbohydrate Esterase AT4G02330 60.526 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01245 K01051 - gmx:100790729 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01245 02 30377708 30380058 Cca02g01245 02 30377708 30380058 ECH