Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01233 ATGAGTGGAGCAAAGGGGAAGAAGAAGGGAGCGAGCTTCGTGATCGATTGCGCGAAGCCGGTGGAGGATAAGATCATGGACATTGCTTCTCTCGAGAAGTTTCTTCAGGAGAGGATTAAGGTTGGTGGCAAGGCCGGCGCACTCGGCGATTCTGTTACCGTCACTCGTGACAAGAGCAAGATCACCGTCACCTCTGACAGCAACTTCTCTAAAAGGTATCTGAAATACTTAACCAAGAAGTACTTGAAAAAACACAATGTGAGGGATTGGCTTCGGGTGATTGCGTCCAACAAGGACAGGAATGTCTATGAGTTGAGATACTTCAACATTGCTGAGAATGAGGGGGAAGAGGAGGACTGA 360 0.4833 MSGAKGKKKGASFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRDKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01233 119 PANTHER 60S RIBOSOMAL PROTEIN L22 2 119 IPR002671 GO:0003735|GO:0005840|GO:0006412
Cca02g01233 119 PANTHER 60S RIBOSOMAL PROTEIN L22-2-LIKE 2 119 - -
Cca02g01233 119 Pfam Ribosomal L22e protein family 9 117 IPR002671 GO:0003735|GO:0005840|GO:0006412
Cca02g01233 119 Gene3D - 1 119 IPR038526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01233 Cca-Chr2 30214195 30215826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01233 4 119 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 89.655 8.28e-65 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01233 K02891 - gmx:100500073 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01233 02 30214195 30215826 Cca02g01233 02 30214195 30215826 ECH