Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01223 ATGAAGTTCTGCAAAACCTATCAGCAATACATGCAGGGCCAGGGCCACAAGCTCCCTGCCGTTGGCTTCAAAAACCTCAAAAAGATCATGAAAAGGTGCAGGAGATCCACCAATCCTCTTAATCAACCCACTTGCCCTAATCAATGCCCAGTGTGCGATGGGACCTTTTTCCCTTCCCTTCTCAACGAAATGTCAGATATAGTAGGGTGCTTTAACCAGCGCGCCCAGGAATTGATGGAACAACATCTTGCTTCTGGCTTCAGAAAGTACTTTCTCATGTTGAAAGCGAAATTGAAGGGGGATCATCCTGGTCTAATCGAAGAAGGCAGAGATCTAGTCGTATATGCACTCATAAATGCCATTGCAATTCGAAAAATATTAAAGAAATATGACAAGATTCATTATTCCAAGCAAGGCCAATTATTCAAGTCCAAAGTTCAGACCATGCACAAGGAAATTCTTCAGAGTCCCTGGCTTATTGAGCTTATTGCCTTTCACATCAACTTAAGGGAAACCAAAGCCAACTCAAGGGTGCCACCTGCGCTGTTCCAAGGTTGTTATCTCACATTCAGGGATGGAAAACCATCACTTACTTGTCAGCTCTTTGATTCCATCAAAATTGATATTGACTTAACTTGCTCTGTATGCCTGGATACAGTGTTTGATCCAGTTTCTCTCACTTGCGGTCACATATTCTGTTATACATGTGCTTGCTCAGTTGCATCAGTTACTATTGTTGATGGACTTAAGGCAGCGAATCCTAAAGAAAAATGTCCTCTATGCCGAATGGGAAGAGTTTACGAAGATGCTGTGCACTTGGAAGAATTAAATATTCTGCTAGGACGAAGCTGCGGGGAGTACTGGGAGGAAAGGCTTCAGATGGAGAGGTTAGAGAGGGTTAAGCAAGTGAAGGAGCACTGGGAAACACAGTGTAGGGCGTTCATGGGCATCTAA 954 0.4361 MKFCKTYQQYMQGQGHKLPAVGFKNLKKIMKRCRRSTNPLNQPTCPNQCPVCDGTFFPSLLNEMSDIVGCFNQRAQELMEQHLASGFRKYFLMLKAKLKGDHPGLIEEGRDLVVYALINAIAIRKILKKYDKIHYSKQGQLFKSKVQTMHKEILQSPWLIELIAFHINLRETKANSRVPPALFQGCYLTFRDGKPSLTCQLFDSIKIDIDLTCSVCLDTVFDPVSLTCGHIFCYTCACSVASVTIVDGLKAANPKEKCPLCRMGRVYEDAVHLEELNILLGRSCGEYWEERLQMERLERVKQVKEHWETQCRAFMGI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01223 317 ProSiteProfiles Zinc finger RING-type profile. 213 262 IPR001841 -
Cca02g01223 317 ProSitePatterns Zinc finger RING-type signature. 228 237 IPR017907 -
Cca02g01223 317 SMART ring_2 213 261 IPR001841 -
Cca02g01223 317 Pfam Zinc finger, C3HC4 type (RING finger) 210 262 - -
Cca02g01223 317 SUPERFAMILY RING/U-box 206 264 - -
Cca02g01223 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 317 - -
Cca02g01223 317 ProSiteProfiles SPX domain profile. 1 144 IPR004331 -
Cca02g01223 317 CDD SPX_BAH1-like 2 140 - -
Cca02g01223 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 315 IPR013083 -
Cca02g01223 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 317 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01223 Cca-Chr2 30028760 30032180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01223 210 262 C3H Transcription Factor Family AT4G28270 39.655 1.44e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01223 K16275 - gmx:100803060 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01223 02 30028760 30032180 Cca02g01223 02 30028760 30032180 ECH