Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01216 ATGGTCGAAACCAGACGGAGCAGCTCCTCCTCTTCCAAGCGCTCTCTCTCTTCGCCCTCTCCCCCCAACAACACCAAACGATCCAAGGTCTCCGAGGATTCCTCATCCACCACCGCCCCTTCCATCGCTCCGGTCAACGAATCTGGAACCGCCAATGAATCCGCCGAACCCGAGCTGCGGCCCTCTGATCTGCCCGATAAGGCCGTCGACGGTTCTGATGCGATGTCGCCGGATAAATCTCCCTCTGCGCCCGTTGAAGCCGAGGCTTTGGTGTCCCCTCAGTGTCTAGGTGAAACTGCGGAGAAATCGAAggcggctggcggggcggcgacggcgacggcgacgacgacggGTGGTCGGTCCAAGAAGCGCCCTACGAAATTGAACCCCAAGGCTGCGTGGGGAAAACTCCTTTCTCAGTGTTCACAAAATCCTCACGTGTCCATGAGTGATCCTATCTTCACTGTTGGTCAAGCTCGTAATTGTAATTTATATCTTAAAGATCCCACTGTCGGTAATGCTTTGTGCAAGTTGAGTCACATAGAGCGTGGAGGCTCCTCTGTTGCATTACTTGAAATCACAGGAGGCAAAGGTTCTATTCAAGTTAATGGAAAAACATATCGAAAGAATCAGAATGCCCGTGTGATTTTAAGTGGTGGTGATGAGGTGGTCTTTGGTTCTTCTGGCAAGCATGCTTATATCTTTCAGCAGCTCACAAATAATATGAATACTGCTGGTATTCCTTCTTCTGTGAGTATTTTAGAAGCCCAGAGTGCTCCAATAAATGGAACTCAAGTTGAAGCTAGATCTGGTGACCCTTCTGCTGTTGCTGGAGCATCGATATTGGCCTCTCTATCTAATATCCATAAAGATTTATCTCTCCTTTCATCTCCGGCTAAAACTGGCCAGAATGTGCAACAGAATGCTGACATTTCATCACTACCTTCTGGCAATGGGGATGATATGCCAGACAATGAAATAAAGGATACCACCAATAATGATGTGCCGTCTGGAGTTTTATCTGCTGACAAAACTGTTCTTGCATCCTCTAACACTGTTAACGATAATCCTAGCCTTGACACAATGGAAGTTGACACCAGTGTGGATGCTGATGTTGGGAAGGTGACTGCTGCTCCGTATGAATTGAGGCCATTACTGCGCATGCTTGATGGTTCATGTCCTGAACTTGATTTAAGTTGTGGCATTACCAAGATATTGGAAGAGCGAAGGGAATTAAGAGAACTCCTTAAAGATGTTGATACCCCAACAATATTGGCATCAACTAGGCGGCATGCATTTAAGGAAAGCTTACTACAGAGAATTCTCAAAGCTGAGAACATTGATGTCTCTTTTGAAACTTTTCCTTATTATCTAAGTGATACAACAAAGAATGTTTTGATTGCTTCTACATTTATTCATCTGAAGTGCAATGGCTTTGGAAAATATGCTTCAGACCTCCCATCAGTGTCTCCACGAATACTGTTATCTGGTCCTGCAGGTTCTGAAATATATCAGGAGACTTTGTGCAAGGCACTTGCAAAGCATTTTGCTGCCAGGCTATTGATTCTGGATTCTCTTTCATTGCCCGGTGGAGCATCACCAAAGGAAGTTGATTCTACTAAAGAAAGTTCCAGAACTGAAAGACCATCTGTGTTTGCTAAGAGAAATGCCCAAACTGCCACATTACACCATAAGAAACCAGCTTCTAGTGTTGATGCTGAAATTATAGGTGGATCCACATTAAGTTCTCAGGCTATGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGGCACTACTCTTAAAGAGGGTGATAGGGTAAAATTTGTTGGTAACTTTCCTTCTGCTGTCTCATCACTACCAAATTATCCTTCAAGGGGACCAAGCTATGGCTCCCGGGGCAAAGTTCTTCTCGCATTTGAAGATAATGGATCTTCAAAAATTGGGGTTAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGTCTTTGTGAAGATGACCGTGGGTTCTTTTGTGCCGCAAATCATTTACTACGGGTAGATGGTTCTGGAGGGGATGATGCAGACAAAGTTGCAATAAATGAAATCTTTGAGGTTACCTCTAATCAGAGTAAAAGTGGTCCACTAGTGTTGTTCATTAAAGATATCGAGAAGGCAATGGTTGGAAACTATGAAGTTTTGAAAAATAAATTTGAAAGTTTGCCACCAAATGTTGTGGTAATTGGCTCTCATACTCTGCTTGACAATCGGAAGGAGAAGACCCAACCTGGTGGCCTTTTGTTTACCAAGTTTGGGAGCAATCAGACCGCACTACTTGATCTTGCTTTTCCGGATAACTTTAGTAGACTGCATGATCGAAGCAAAGAAACCCCTAAAGTAATGAAGCAACTTGGTCGCCTTTTCCCAAATAAAGTGACAATACAGCTGCCTCAGGATGAGGCTTTACTTTCTGATTGGAAGCAGCAATTAGAACGGGATATTGAAACTATGAAAGCTCAGTCCAATATTGTCAGCATTCGCACAGTTTTCAACAAGATTGGATTGGATTGCCCTGACATTGAGACTCTTTGCGTTAAAGATCAAACCCTAACACCTGAGAGTGTGGAGAAGATCATAGGCTGGGCTATAAGTTATCATTTTATGCATTCGTCTGAAACAGCTATCAAAGATTCTAAGCTTCTGATATCTGCAGAAAGCATTAATTATGGGCTTAACATTCTACAGGGCATTCAAAATGAGAACAAGAACTTGAAAAAATCACTGAAGGATGTGGTTACCGAGAATGAATTTGAGAAAAAACTCCTTGCTGATGTTATTCCACCAACTGATATTGGGGTCACATTTGATGATATTGGAGCTTTAGAAAATGTTAAGGACACCTTGAAGGAATTGGTCATGCTTCCTCTTCAAAGGCCTGAATTATTTTGCAGAGGACAGCTGACAAAGCCTTGCAAGGGAATATTGCTTTTTGGCCCCCCTGGAACAGGAAAAACAATGCTCGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCCAAGTGGTTTGGTGAAGGAGAGAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTAGACGAGGTTGACAGTATGTTGGGGAGACGTGAAAACCCTAGTGAGCACGAGGCTATGCGAAAAATGAAAAATGAGTTTATGGTTAATTGGGATGGTCTACGTACGAAAGATAAAGAGCGGGTACTTGTTCTTGCTGCTACAAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGAAGATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGTCATTTTAGCAAAAGAAGATTTGGCTCCTGATGTTGATTTTGAATCAATGGCTAATATGACTGATGGATATTCTGGGAGTGACCTAAAGAATCTGTGTGTTACAGCAGCTCACTGCCCAATACGAGAGATCTTGGAGAAGGAAAAGAGGGAGAGAAGCTTAGCATTGTCAGAGAACAAACCTTTACCTGGCTTGTGTGGCAGCGAAGACATTCGTCCTTTAAAGATGGATGATTTTAGATATGCACATGAGCAGGTGTGTGCAAGCGTGTCATCAGAGTCAAATAATATGAATGAGCTACTCCAATGGAATGACCTCTATGGGGAAGGTGGATCAAGAAAAATGAGATCACTGAGCTATTTCATGTAA 3762 0.4219 MVETRRSSSSSSKRSLSSPSPPNNTKRSKVSEDSSSTTAPSIAPVNESGTANESAEPELRPSDLPDKAVDGSDAMSPDKSPSAPVEAEALVSPQCLGETAEKSKAAGGAATATATTTGGRSKKRPTKLNPKAAWGKLLSQCSQNPHVSMSDPIFTVGQARNCNLYLKDPTVGNALCKLSHIERGGSSVALLEITGGKGSIQVNGKTYRKNQNARVILSGGDEVVFGSSGKHAYIFQQLTNNMNTAGIPSSVSILEAQSAPINGTQVEARSGDPSAVAGASILASLSNIHKDLSLLSSPAKTGQNVQQNADISSLPSGNGDDMPDNEIKDTTNNDVPSGVLSADKTVLASSNTVNDNPSLDTMEVDTSVDADVGKVTAAPYELRPLLRMLDGSCPELDLSCGITKILEERRELRELLKDVDTPTILASTRRHAFKESLLQRILKAENIDVSFETFPYYLSDTTKNVLIASTFIHLKCNGFGKYASDLPSVSPRILLSGPAGSEIYQETLCKALAKHFAARLLILDSLSLPGGASPKEVDSTKESSRTERPSVFAKRNAQTATLHHKKPASSVDAEIIGGSTLSSQAMLKQEVSTASSKGTTLKEGDRVKFVGNFPSAVSSLPNYPSRGPSYGSRGKVLLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCAANHLLRVDGSGGDDADKVAINEIFEVTSNQSKSGPLVLFIKDIEKAMVGNYEVLKNKFESLPPNVVVIGSHTLLDNRKEKTQPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKVMKQLGRLFPNKVTIQLPQDEALLSDWKQQLERDIETMKAQSNIVSIRTVFNKIGLDCPDIETLCVKDQTLTPESVEKIIGWAISYHFMHSSETAIKDSKLLISAESINYGLNILQGIQNENKNLKKSLKDVVTENEFEKKLLADVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCRGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPSEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKILRVILAKEDLAPDVDFESMANMTDGYSGSDLKNLCVTAAHCPIREILEKEKRERSLALSENKPLPGLCGSEDIRPLKMDDFRYAHEQVCASVSSESNNMNELLQWNDLYGEGGSRKMRSLSYFM 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01216 1253 SMART AAA_5 985 1122 IPR003593 -
Cca02g01216 1253 MobiDBLite consensus disorder prediction 109 123 - -
Cca02g01216 1253 SUPERFAMILY SMAD/FHA domain 134 229 IPR008984 GO:0005515
Cca02g01216 1253 Pfam AAA+ lid domain 1142 1177 IPR041569 -
Cca02g01216 1253 Gene3D - 947 1226 IPR027417 -
Cca02g01216 1253 MobiDBLite consensus disorder prediction 550 565 - -
Cca02g01216 1253 MobiDBLite consensus disorder prediction 1 55 - -
Cca02g01216 1253 CDD AAA 987 1120 - -
Cca02g01216 1253 CDD FHA 150 236 IPR000253 GO:0005515
Cca02g01216 1253 ProSitePatterns AAA-protein family signature. 1092 1111 IPR003960 GO:0005524|GO:0016887
Cca02g01216 1253 Gene3D - 1121 1215 - -
Cca02g01216 1253 MobiDBLite consensus disorder prediction 531 571 - -
Cca02g01216 1253 MobiDBLite consensus disorder prediction 1 127 - -
Cca02g01216 1253 MobiDBLite consensus disorder prediction 329 361 - -
Cca02g01216 1253 Pfam ATPase family associated with various cellular activities (AAA) 989 1118 IPR003959 GO:0005524|GO:0016887
Cca02g01216 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 948 1224 IPR027417 -
Cca02g01216 1253 MobiDBLite consensus disorder prediction 299 361 - -
Cca02g01216 1253 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1253 - -
Cca02g01216 1253 MobiDBLite consensus disorder prediction 299 319 - -
Cca02g01216 1253 Coils Coil 909 929 - -
Cca02g01216 1253 Gene3D - 133 245 - -
Cca02g01216 1253 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01216 Cca-Chr2 29951828 29963844 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01216 948 1192 Calmodulin-binding Proteins AT3G56690 39.286 7.62e-41 162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01216 02 29951828 29963844 Cca02g01216 02 29951828 29963844 ECH