Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01215 ATGGTAGAAACCAGAAGCGGCTCCTCTTCTTCTTCCAAGCGCTCTCTCTCTTCACCTTCTGCCCCCAACATGAAACGATCCAAGGTGTCAGAGGATTACTCACCCACCAACGTGCAATCTGTGGCTCCAGCAAGCGAATCTGGGGAACCGGAACTACGACCCTCTGATCTGCCAGTTACGGCTTCGTTGAAGGGTGTGGATGATTGTGACATGGAAAAGTCTCCTCCTGAAGCCGAGGTTTTGGTGCCACCCCAGTATGTAGGTGTACCTGCGGAGAATTTGGCTGGTGTAGGAGCTGCACCTAGTCGGTTGAAGAAACATAATGTGAAATTGAGTCCCAAGACTGCGTGGGGAAAGCTCTTATCTCAGTGTTCTCAGAATCCTCACGTGTCCATGAGTGAACCTATCTTCACTGTCGGTCAAGGTGGAAATTGTAATTTATGGCTTGAAGATCCCACCATTGTTGGTGTTTTGTGCAAGTTGAGCCACATAGAGTGTGGAGGTTCATCTGGTGCACTACTGGAAATAACAGGGGGCAAAGGTTTTATTCACGTTAATGGGAGGATTCATAGAAAGAATGCTCGACTAATTTTAAGTGGAGGTGACGAGGTTGTCTTTGGTTCATCTGCTAAGTATGCTTATATCTTTCAGCAGCTGACGAATGATAATATTAGTACTGCTGATATACCTTCTGTGAGTATTTTGGAAGCCCAGAGTGCTCCAATAAATGGAATGCAGGTTGAAGCTAGATCTGGCGACCCTTCTGCTGTTGCTGGAGCATCTATATTGGCCTCTTTGTCTAATATTCGTAAAGAATTATCTCTCCTTCCACCTACTGCTAAAACCTGCCAGAATGTGCAACAGGACACTGACATTTCTTCACTACCTTCTGGCATTGGGGATGATATCCCAGTCAATGACATGAAGGATACCACCGATAATGATGAACCAGCTGGAGAACTTTCTGCTGAGAAAACTGTTCTTGCATCCTCTACCACTGTTAACAAAAATCCTAGCCTTGACACAGTGGATGTTGATACCAATATTGATGCAGATGTTGGGAAGATGACTGCTGCTAGATGCGAATTAAGACCAATACTGCACATGCTTGCTGGTTCATGTCCTGAATTTGATTTAAATGGCAGCATTTCCAAGATATTGGGAGAGCAAGGGGAATTAAGAGAACTCCTTAAAGATGTTGATACCCCAACAGTGTTGGCATCCACCAAGCAGCAAGCATTTAAGGACAGTTTACAACAGAGAATTCTCAAAGCTGATAATATTGATGTTTCATTTGAAACTTTCCCATATTATCTAAGTGATACAACCAAGAACGTTTTGATAGCTTCTACATTTATCCATTTGAAGTGCAATGGCTTTGGAAAATATGCCGACCTTCCATCATTGTCTCCGCGGATATTGTTATCTGGTCCTGCAGGTTCGGAAATATATCAGGAGACTTTGTCCAAGGCACTTGTGAAGCATTTTGGTGCCAGGCTACTAATTGTGGATTCTCTTTCACTGCCTGGTGGATCATCGGCAAAGGAAGTTGATTCTGCCAAAGAAAGTTCTAGGCCTGAAAAACCATCTGTGTTTTCTAAGAGAAATGCTCAGATTGCCGCATTGCAGCATAAGAGACCCACATGTAGTGTCGATGCTGAAATTATAGGTGGATGCAAACTAAATACTCAGGTTATGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGGCGCTACCCTCAAAAAGGGTGATCGAGTAAAATTTATTGGTAGCTTTCCTTCTGCTGTCTCATCGCTACCAAATAATATTTCAAGGGGACCGAGCTATGGCTCCCGGGGCAAAGTTCTCCTGGCTTTTGAAGATAATGGGGCTTCAAAAATTGGGGTTAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGTGGCCTTTGCGAAGATGATCGTGGGTTCTTCTGTTCTGCAAATCATTTACTACGGGTAGATGGCTCTGGAGCGGATGACCTTGGCAAAGTTGCAATTAATGAAATTTTTGAGGATAACTTGAGTAGACTGCATGATAGGAGCAAAGAAACCCACAAAGTCATGAAGCAACTTAATCGCCTTTTTCCAAACAAAGTGACTGTACAGTTGCCTCAGGACGAGGCTTTACTTTCTGACTGGAAGCAGCAGTTAGATCGTGACATTGAAACTATGAAAGCTCAGTCCAATGTTGTCAGCATTCGCTCAGTTCTCAACAGAATTGGATTGGTTTGCCCTGACCTTGAGACTCTTTGCATTAAAGACCATGCCCTAACAACCGAGAGTGTGGAGAAGATCATTGGATGGGCTATAAGTTACCATTTTATGCATTCATCTGAAGCTTCTACAAGAGATTCTAAGCTTGTAATATCTGCAGAAAGCATTAAGTATGGACTTAACATTCTACAGGGAATTCAAAATGAGAACAAGAATGTGAAAAAATCACTCAAGGATGTGGTTACTGAGAATGAATTTGAGAAAAAACTACTTGCTGATGTTATTCCACCAACTGATATTGGGGTCACATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTCATGCTTCCTCTTCAGAGGCCTGAATTGTTTAGTAAAGGGCAGCTGGCCAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTTATTAACATTTCAATGTCCAGCATAACTTCCAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCTTTGGCCAGCAAAATTGCTCCTAGTGTCATTTTTGTCGATGAGGTTGATAGTATGTTAGGAAGGCGTGAAAATCCTGGTGAGCACGAGGGCATGCGTAAAATGAAGAATGAGTTCATGGTTAATTGGGATGGTTTGCGAACAAAAGATAAAGAACGAATACTTGTTCTTGCTGCTACAAACAGACCTTTTGATCTTGATGAAGCTGTTATTAGGAGGCTTCCACGAAGAATGATGGTTAATCTGCCAGATGCTCCAAATAGAGAAAAAATTGTCAGTGTTATTTTGGCAAAAGAAGATTTGGCACCTGATGTTGATTTTGAAGCAATAGCAAATATGACTGATGGATATTCAGGGAGTGACCTAAAGAATATGTGTGTCACAGCAGCTCACTGCCCAATAAGAGAGATCTTGTTGAAGGAAAAGAAGGAGAAAAACTTGGCATTAGCTGAGAACCAACCTTTACCTGGGTTGTGTAGCAGTAGCGACATTCGTCCCTTAAAGATGGAGGATTTTAGATATGCACATGAGCAGGTTTGTGCTAGCGTGTCATCAGATTCAAGAAATATGAATGAACTACTCCAATGGAACGACCTCTATGGAGAAGGTGGATCAAGAAAAATGAGATCTCTGAGCTATTTCATGTAA 3465 0.4234 MVETRSGSSSSSKRSLSSPSAPNMKRSKVSEDYSPTNVQSVAPASESGEPELRPSDLPVTASLKGVDDCDMEKSPPEAEVLVPPQYVGVPAENLAGVGAAPSRLKKHNVKLSPKTAWGKLLSQCSQNPHVSMSEPIFTVGQGGNCNLWLEDPTIVGVLCKLSHIECGGSSGALLEITGGKGFIHVNGRIHRKNARLILSGGDEVVFGSSAKYAYIFQQLTNDNISTADIPSVSILEAQSAPINGMQVEARSGDPSAVAGASILASLSNIRKELSLLPPTAKTCQNVQQDTDISSLPSGIGDDIPVNDMKDTTDNDEPAGELSAEKTVLASSTTVNKNPSLDTVDVDTNIDADVGKMTAARCELRPILHMLAGSCPEFDLNGSISKILGEQGELRELLKDVDTPTVLASTKQQAFKDSLQQRILKADNIDVSFETFPYYLSDTTKNVLIASTFIHLKCNGFGKYADLPSLSPRILLSGPAGSEIYQETLSKALVKHFGARLLIVDSLSLPGGSSAKEVDSAKESSRPEKPSVFSKRNAQIAALQHKRPTCSVDAEIIGGCKLNTQVMLKQEVSTASSKGATLKKGDRVKFIGSFPSAVSSLPNNISRGPSYGSRGKVLLAFEDNGASKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANHLLRVDGSGADDLGKVAINEIFEDNLSRLHDRSKETHKVMKQLNRLFPNKVTVQLPQDEALLSDWKQQLDRDIETMKAQSNVVSIRSVLNRIGLVCPDLETLCIKDHALTTESVEKIIGWAISYHFMHSSEASTRDSKLVISAESIKYGLNILQGIQNENKNVKKSLKDVVTENEFEKKLLADVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFSKGQLAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEGMRKMKNEFMVNWDGLRTKDKERILVLAATNRPFDLDEAVIRRLPRRMMVNLPDAPNREKIVSVILAKEDLAPDVDFEAIANMTDGYSGSDLKNMCVTAAHCPIREILLKEKKEKNLALAENQPLPGLCSSSDIRPLKMEDFRYAHEQVCASVSSDSRNMNELLQWNDLYGEGGSRKMRSLSYFM 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01215 1154 Pfam AAA+ lid domain 1043 1078 IPR041569 -
Cca02g01215 1154 Coils Coil 1154 1154 - -
Cca02g01215 1154 ProSitePatterns AAA-protein family signature. 993 1012 IPR003960 GO:0005524|GO:0016887
Cca02g01215 1154 Gene3D - 848 1127 IPR027417 -
Cca02g01215 1154 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 680 - -
Cca02g01215 1154 Gene3D - 1022 1116 - -
Cca02g01215 1154 CDD AAA 888 1021 - -
Cca02g01215 1154 SUPERFAMILY SMAD/FHA domain 117 214 IPR008984 GO:0005515
Cca02g01215 1154 Gene3D - 116 226 - -
Cca02g01215 1154 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 680 - -
Cca02g01215 1154 SMART AAA_5 886 1023 IPR003593 -
Cca02g01215 1154 MobiDBLite consensus disorder prediction 511 531 - -
Cca02g01215 1154 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 683 1154 - -
Cca02g01215 1154 Pfam ATPase family associated with various cellular activities (AAA) 890 1019 IPR003959 GO:0005524|GO:0016887
Cca02g01215 1154 Coils Coil 810 830 - -
Cca02g01215 1154 MobiDBLite consensus disorder prediction 1 44 - -
Cca02g01215 1154 MobiDBLite consensus disorder prediction 1 76 - -
Cca02g01215 1154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 849 1128 IPR027417 -
Cca02g01215 1154 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 683 1154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01215 Cca-Chr2 29919039 29932335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01215 849 1134 Calmodulin-binding Proteins AT3G56690 34.364 7.86e-39 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01215 - - gmx:100800938 1655.96