Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01208 ATGGGTGATAACATAGGCAAAGGCTCACACAGAGAAGGGTTTAAGTACAACTTCACAGCTTCAACTACAGCTGCAAGTGATACCTGCTCTTTGCAAGATGGGGTCATCAAGGAGCAAGATCGGTTGCTTCCAATAGCTAACGTGGGGCGGATCATGAAGCAAATCCTTCCTCCTAACGCTAAAATCTCAAAGGAAGCTAAAGAAACCATGCAAGAATGTGTGTCCGAGTTCATCAGCTTTGTGACTGGGGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACTGTGAATGGCGACGATATTTGCTATGCCTTGGCTACCCTAGGGTTTGATGACTACACTGACCCACTTAAAAGGGTTTGGAATCCTCGCTATTTAGAAGCAACTTTGAGCATCAATCAATCTGACTAA 414 0.4517 MGDNIGKGSHREGFKYNFTASTTAASDTCSLQDGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICYALATLGFDDYTDPLKRVWNPRYLEATLSINQSD 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01208 137 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 20 123 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca02g01208 137 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 20 123 - -
Cca02g01208 137 Gene3D Histone, subunit A 32 135 IPR009072 GO:0046982
Cca02g01208 137 SUPERFAMILY Histone-fold 39 122 IPR009072 GO:0046982
Cca02g01208 137 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 42 106 IPR003958 -
Cca02g01208 137 ProSitePatterns NF-YB/HAP3 subunit signature. 73 89 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cca02g01208 137 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Cca02g01208 137 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Cca02g01208 137 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01208 Cca-Chr2 29781248 29782873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01208 4 126 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.041 1.80e-52 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca02g01208 CBFD_NFYB_HMF 4.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01208 K08065 - gmx:100796514 197.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01208 02 29781248 29782873 Cca02g01208 02 29781248 29782873 ECH