Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01207 ATGACAAATATTTCAGGTGATGAAGGAAGTTTGTCCTCAGCAAACACTGTGGAAGAAGTTCACCAAGAAAACAAGCAGCAACAACCACAAAACCACCCTCATGGCTCAGCTTCTGGTGTTTGCAACAGCAATAGTTCCACCAACCAACAACAACAACAGGCAACCAAGAAGAAAAGAAACCTACCTGGAACCCCAGATCCGAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGTAGAGGTCACAATCTTCCATGGAAACTGAGGCAGAGAGGAAGCAATGACGTGAAGAAAAGGGTTTATGTGTGTCCTGAGCCATCATGCGTCCACCATAACCCAGCTCGTGCATTAGGAGACCTCACTGGCATAAAAAAACATTACAGCAGAAAACATGGCGAAAAGAAGTGGAAATGTGACAAGTGCTCTAAAAGATATGCAGTCCAATCTGATTGGAAGGCCCACCAGAAAACCTGTGGAACCAGGGAATACAAATGTGATTGTGGGACCATATTTTCAAGAAGAGACAGTTTTATCACACACAGAGCCTTTTGTGACGCATTAACCGAAGAAAACAACCGAGTGAGCCAGGGATTAACGCCAAACATGCAAAATGAATTGGCGCGGGACCTTATGGCCACAATGCCTCTAAGCACAAGTTCCAACACCGTACCACAGAAAACCCTATCCCAAGAACATGTCCCTATGCCATTCAAGTCCATGAGCATGGGTGGTGGCATGCTCTCCACCACCTCAGGTACACTCTTTGGTGGTCCAAAAAACATGTCTCCCTCTTGTTCCACCCTTCAACTCAGCTCCAACAACTCCACTGCTTTCAATTACTTCCAAGACAGCACAATCTCTTCTGCTTCAGCTCACATGTCTGCAACAGCTTTACTACAGAAAGCAGCACAAATGGGTGCCACTGCAAGCAGCAACAGCATTAACTCCCCCATGATGCAGAAAAGCTTTGTTAGTAGCATGGCTTGTTCTGACCACCTCCATAACTCTTCTTCCTATGACCCCTTTCATCAATCTCACATGGCTGGGATTAGTGGTGCTGGAGCCTTCACCAACCAAATTTTCCATAAGGGGCAACAAGATCATATGCCACTCATATTTGATGCTAACAACACCACTATGGGAATGCTTGGCACAATGTTCATGGGAAGTGACCACAACCAAGGCTTGATGAATAACATGGAACAAGGGCTTGATGTGGCAGAAGGAAATCCAATTAGGGCATCAAAGTTTGGAGGTGGTGACGACATGACAACGGTTCATGACTTCTTGGGCGTTGGTGCAACTTCAAGGGCAGCGAGTTTGCATGAACCACAGAGGTTGCGAATCATGAATCACTTTCACCTTCCACATGGGGATTCAGCTATGGAGAAATCCATTTGGGACATTTGA 1485 0.4559 MTNISGDEGSLSSANTVEEVHQENKQQQPQNHPHGSASGVCNSNSSTNQQQQQATKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSNDVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVSQGLTPNMQNELARDLMATMPLSTSSNTVPQKTLSQEHVPMPFKSMSMGGGMLSTTSGTLFGGPKNMSPSCSTLQLSSNNSTAFNYFQDSTISSASAHMSATALLQKAAQMGATASSNSINSPMMQKSFVSSMACSDHLHNSSSYDPFHQSHMAGISGAGAFTNQIFHKGQQDHMPLIFDANNTTMGMLGTMFMGSDHNQGLMNNMEQGLDVAEGNPIRASKFGGGDDMTTVHDFLGVGATSRAASLHEPQRLRIMNHFHLPHGDSAMEKSIWDI 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01207 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Cca02g01207 494 Gene3D Classic Zinc Finger 140 219 - -
Cca02g01207 494 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 472 - -
Cca02g01207 494 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Cca02g01207 494 Gene3D Classic Zinc Finger 62 130 - -
Cca02g01207 494 MobiDBLite consensus disorder prediction 1 59 - -
Cca02g01207 494 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 472 - -
Cca02g01207 494 MobiDBLite consensus disorder prediction 1 70 - -
Cca02g01207 494 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Cca02g01207 494 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
Cca02g01207 494 SMART c2h2final6 161 181 IPR013087 -
Cca02g01207 494 SMART c2h2final6 85 107 IPR013087 -
Cca02g01207 494 SMART c2h2final6 126 156 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01207 Cca-Chr2 29747743 29751491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01207 35 339 IDZ Gene Family AT3G50700 53.936 1.71e-113 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g01207 zf-C2H2 0.005 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01207 - - gmx:100797943 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01207 02 29747743 29751491 Cca02g01207 02 29747743 29751491 ECH