Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01205 ATGGACTTGTACGGTCGGAGCCCCGCCAGAAATGGATCCAACCCGCCGAACCAACCCGAATGGCGCTCACCGGCCACCGACACTGGCCTCGAAGAATCCATGTGGCATTTGGCGCTAGGTGGCGGCGAATCTTACCCGGAGCGTCCCGGTGTCGCCAATTGTGTCTATTATATGCGGACTGGGATGTGTGGATATGGCAGCAGGTGTCGTTACAATCATCCTCGTGATCGTGCTGCGGTTGTTGCGGCAGTAAGAGCTACAGGGGACTACCCAGAACGGGTGGGGGAACCCCCATGTCAGTATTATATCAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAGTTCCACCATCCTAAAAACGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTATGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAGCGGGGCAGTGCAAATTCGGTGTATCGTGTAAATTCCATCATCCTCAACCTGCTGGCACATCGATGCCAGAATCTGCGCCTCAATTTTATCAACAGGTGCAGTCTCCTACAGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCACAAGCTTGAGAGTGGCTAGGCCTCCCATATTGCCTGGCTCGTATGTACAGGGGGCTTATGGTCCTGTACTTCTTTCCCCTGGGGTTGTTCCATTTCCTGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTACCATCTCCTGGTGCTCAACCTGCCGTTGGGGCTACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATATACTCCGCTGCCCTCTACTACCGGTCCTTCAGCAAGCAGCCTGAAGGAAAAATTATTTCCTGAAAGACCGGGTGAACCAGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCAGGATCATACTGTGGCACGACCACTTCTTAGCCCCGTCGGACTTCCTTTACGTCCGGTATGTGGTTACTCAACTTCTTACATACAAGAATGGGTGTAG 1065 0.5042 MDLYGRSPARNGSNPPNQPEWRSPATDTGLEESMWHLALGGGESYPERPGVANCVYYMRTGMCGYGSRCRYNHPRDRAAVVAAVRATGDYPERVGEPPCQYYIKTGTCKFGASCKFHHPKNGGGYLSQAPLNVYGYPLRPGEKECSYYLKAGQCKFGVSCKFHHPQPAGTSMPESAPQFYQQVQSPTVPLPEQYGGASTSLRVARPPILPGSYVQGAYGPVLLSPGVVPFPGWSHYSAPVSPVPSPGAQPAVGATSLYGVTQLSSPTSAFARPYTPLPSTTGPSASSLKEKLFPERPGEPECQYYLRTGDCKFGLACRYHHPQDHTVARPLLSPVGLPLRPVCGYSTSYIQEWV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01205 354 Gene3D - 279 334 - -
Cca02g01205 354 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Cca02g01205 354 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Cca02g01205 354 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Cca02g01205 354 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Cca02g01205 354 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Cca02g01205 354 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Cca02g01205 354 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Cca02g01205 354 Gene3D - 43 124 - -
Cca02g01205 354 MobiDBLite consensus disorder prediction 271 287 - -
Cca02g01205 354 SUPERFAMILY CCCH zinc finger 51 77 IPR036855 GO:0046872
Cca02g01205 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Cca02g01205 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Cca02g01205 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Cca02g01205 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Cca02g01205 354 Gene3D - 126 175 - -
Cca02g01205 354 PANTHER PROTEIN PHOSPHATASE RELATED 1 352 - -
Cca02g01205 354 SUPERFAMILY CCCH zinc finger 301 324 IPR036855 GO:0046872
Cca02g01205 354 MobiDBLite consensus disorder prediction 1 26 - -
Cca02g01205 354 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Cca02g01205 354 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Cca02g01205 354 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 1 352 - -
Cca02g01205 354 MobiDBLite consensus disorder prediction 271 294 - -
Cca02g01205 354 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Cca02g01205 354 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01205 Cca-Chr2 29724461 29728202 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01205 1 354 C2H2 Transcription Factor Family AT5G18550 50.000 5.46e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca02g01205 zf-CCCH 3.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01205 - - gmx:100805017 665.996