Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca02g01205 | ATGGACTTGTACGGTCGGAGCCCCGCCAGAAATGGATCCAACCCGCCGAACCAACCCGAATGGCGCTCACCGGCCACCGACACTGGCCTCGAAGAATCCATGTGGCATTTGGCGCTAGGTGGCGGCGAATCTTACCCGGAGCGTCCCGGTGTCGCCAATTGTGTCTATTATATGCGGACTGGGATGTGTGGATATGGCAGCAGGTGTCGTTACAATCATCCTCGTGATCGTGCTGCGGTTGTTGCGGCAGTAAGAGCTACAGGGGACTACCCAGAACGGGTGGGGGAACCCCCATGTCAGTATTATATCAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAGTTCCACCATCCTAAAAACGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTATGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAGCGGGGCAGTGCAAATTCGGTGTATCGTGTAAATTCCATCATCCTCAACCTGCTGGCACATCGATGCCAGAATCTGCGCCTCAATTTTATCAACAGGTGCAGTCTCCTACAGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCACAAGCTTGAGAGTGGCTAGGCCTCCCATATTGCCTGGCTCGTATGTACAGGGGGCTTATGGTCCTGTACTTCTTTCCCCTGGGGTTGTTCCATTTCCTGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTACCATCTCCTGGTGCTCAACCTGCCGTTGGGGCTACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATATACTCCGCTGCCCTCTACTACCGGTCCTTCAGCAAGCAGCCTGAAGGAAAAATTATTTCCTGAAAGACCGGGTGAACCAGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCAGGATCATACTGTGGCACGACCACTTCTTAGCCCCGTCGGACTTCCTTTACGTCCGGTATGTGGTTACTCAACTTCTTACATACAAGAATGGGTGTAG | 1065 | 0.5042 | MDLYGRSPARNGSNPPNQPEWRSPATDTGLEESMWHLALGGGESYPERPGVANCVYYMRTGMCGYGSRCRYNHPRDRAAVVAAVRATGDYPERVGEPPCQYYIKTGTCKFGASCKFHHPKNGGGYLSQAPLNVYGYPLRPGEKECSYYLKAGQCKFGVSCKFHHPQPAGTSMPESAPQFYQQVQSPTVPLPEQYGGASTSLRVARPPILPGSYVQGAYGPVLLSPGVVPFPGWSHYSAPVSPVPSPGAQPAVGATSLYGVTQLSSPTSAFARPYTPLPSTTGPSASSLKEKLFPERPGEPECQYYLRTGDCKFGLACRYHHPQDHTVARPLLSPVGLPLRPVCGYSTSYIQEWV | 354 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca02g01205 | 354 | Gene3D | - | 279 | 334 | - | - | |
Cca02g01205 | 354 | ProSiteProfiles | Zinc finger C3H1-type profile. | 139 | 167 | IPR000571 | GO:0046872 | |
Cca02g01205 | 354 | SMART | c3hfinal6 | 139 | 166 | IPR000571 | GO:0046872 | |
Cca02g01205 | 354 | SMART | c3hfinal6 | 93 | 120 | IPR000571 | GO:0046872 | |
Cca02g01205 | 354 | SMART | c3hfinal6 | 296 | 323 | IPR000571 | GO:0046872 | |
Cca02g01205 | 354 | SMART | c3hfinal6 | 48 | 75 | IPR000571 | GO:0046872 | |
Cca02g01205 | 354 | SUPERFAMILY | CCCH zinc finger | 96 | 121 | IPR036855 | GO:0046872 | |
Cca02g01205 | 354 | ProSiteProfiles | Zinc finger C3H1-type profile. | 48 | 76 | IPR000571 | GO:0046872 | |
Cca02g01205 | 354 | Gene3D | - | 43 | 124 | - | - | |
Cca02g01205 | 354 | MobiDBLite | consensus disorder prediction | 271 | 287 | - | - | |
Cca02g01205 | 354 | SUPERFAMILY | CCCH zinc finger | 51 | 77 | IPR036855 | GO:0046872 | |
Cca02g01205 | 354 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 141 | 166 | IPR000571 | GO:0046872 | |
Cca02g01205 | 354 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 96 | 120 | IPR000571 | GO:0046872 | |
Cca02g01205 | 354 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 50 | 75 | IPR000571 | GO:0046872 | |
Cca02g01205 | 354 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 298 | 323 | IPR000571 | GO:0046872 | |
Cca02g01205 | 354 | Gene3D | - | 126 | 175 | - | - | |
Cca02g01205 | 354 | PANTHER | PROTEIN PHOSPHATASE RELATED | 1 | 352 | - | - | |
Cca02g01205 | 354 | SUPERFAMILY | CCCH zinc finger | 301 | 324 | IPR036855 | GO:0046872 | |
Cca02g01205 | 354 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cca02g01205 | 354 | ProSiteProfiles | Zinc finger C3H1-type profile. | 93 | 121 | IPR000571 | GO:0046872 | |
Cca02g01205 | 354 | SUPERFAMILY | CCCH zinc finger | 141 | 167 | IPR036855 | GO:0046872 | |
Cca02g01205 | 354 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 | 1 | 352 | - | - | |
Cca02g01205 | 354 | MobiDBLite | consensus disorder prediction | 271 | 294 | - | - | |
Cca02g01205 | 354 | ProSiteProfiles | Zinc finger C3H1-type profile. | 296 | 324 | IPR000571 | GO:0046872 | |
Cca02g01205 | 354 | MobiDBLite | consensus disorder prediction | 10 | 24 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca02g01205 | Cca-Chr2 | 29724461 | 29728202 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca02g01205 | 1 | 354 | C2H2 Transcription Factor Family | AT5G18550 | 50.000 | 5.46e-115 | 340 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Cca02g01205 | zf-CCCH | 3.4e-09 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca02g01205 | - | - | gmx:100805017 | 665.996 |