Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01204 ATGCAATTGCGTAGACCGAAATCCGAAAGAGGAGAGAAATTAATAAAGAAAGAAAAGCCCCACATACCGTACAGTCCTAGTGAGAGAGAAAGCACGCTCTGTACAGTGAAGCTCCTTCTCCGTCTCTCCGAATCCATGTGGCATTTGACGCTCAATTGTGTCTACTACATGCGGACTGGGGCGTGTGGATATGGTAGCAGGTGCCGGTACAATCACCCGCGTGATCGTGCTGAGGTTGCTGCGAGAGTAAGAGCTATAGGGGACTACTCAGAACGGGTGGGGGAACCTCCATGCCAGGCACCTATAAGCCCTGTGCTATCACCTGGCGCTTAA 333 0.5135 MQLRRPKSERGEKLIKKEKPHIPYSPSERESTLCTVKLLLRLSESMWHLTLNCVYYMRTGACGYGSRCRYNHPRDRAEVAARVRAIGDYSERVGEPPCQAPISPVLSPGA 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01204 110 SMART c3hfinal6 49 74 IPR000571 GO:0046872
Cca02g01204 110 MobiDBLite consensus disorder prediction 1 25 - -
Cca02g01204 110 PANTHER PROTEIN PHOSPHATASE RELATED 50 99 - -
Cca02g01204 110 Gene3D - 43 101 - -
Cca02g01204 110 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 74 IPR000571 GO:0046872
Cca02g01204 110 MobiDBLite consensus disorder prediction 1 27 - -
Cca02g01204 110 ProSiteProfiles Zinc finger C3H1-type profile. 52 75 IPR000571 GO:0046872
Cca02g01204 110 SUPERFAMILY CCCH zinc finger 47 76 IPR036855 GO:0046872
Cca02g01204 110 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 50 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01204 Cca-Chr2 29718880 29720472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01204 52 99 C2H2 Transcription Factor Family AT5G18550 59.184 4.50e-16 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca02g01204 zf-CCCH 1.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01204 - - gmx:100805017 100.523