Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01196 ATGAGCGAAGCTCCACAGTTACGCAGAACATGCGACTATTGTGGGGACTTGGCGGCTCTCTTATATTGCAGAGCCGATTCTGCCAGACTCTGTTTCTTCTGCGACCGCAAAGTTCACTTCCCCAACCAGCTTTTCTCCAAGCACGCGCGCGCTCTGTTATGTGACGCGTGTGGCGATTCCCCTGCCTCCGTCCTCTGTTTTTCTGAGGACTCTGTTCTGTGCCATAATTGTGACTGCCAAAGCCACAACCTTTCGCTGTCTCCTGTGCACCAACGAAGGACCCTCCAAGGCTTCTCGGGGTGCCCTTCTGGGACTCAGTTGTTGGGAATTCTGGGTCTCACTGAAAAATCTCTGCTTTCAGCAGAGGGAAGTTCCCAGATTGAAGGCCTTTCGGATTTCCACGTCTGGACTGATCCTTCTGCTGTTGGCCTTGAAGATTTGATAACAGACACTGCTTCGTCTCACAAGAATCGCAAGGGTGCGTGCGGGAGACAGAAAGAAGAAATTGTTAGCCAGCTCCGTGAACTGATAAAGGTTGAGGCCGACTTGGTTCATGAAGAAGTAGATGCCGAACAACAACTACAACTTGGAAATTTGTCCACTGGTTTTGAACGTGACATAGATGCTAATGTGTTTCCTTCATACGAGGCAGGTGTGTTCTGTTGGCATGGAGAGAGTAGTGATCCTACGAATCAAATTGTTCCATCTGATACGCCACTGCGAGATTTTGGCGAGGTAGTTCCAGATAAACATACAAGTTTCACCATCCCTGGGACTCACGCCAATTTTAACGACCAAGGGAAACCATCAAATTCGTTTAGCGCTGAAAACATGTCTCCTGCTCCTCCTAAAGCTACCCCATATGAGTTAACAAGTCATGAAAGAGATTCAGCATTATTGCGATACCGAGAGAAGAAGAAAACCAGAAGATATGACAAGCACATCAGATACGAATCACGAAAAGTTCGGGCAGAAAGCAGGATGAGAATTAAGGGTCGGTTTGTGAAAGATGAAACACAAAAATAA 1026 0.4727 MSEAPQLRRTCDYCGDLAALLYCRADSARLCFFCDRKVHFPNQLFSKHARALLCDACGDSPASVLCFSEDSVLCHNCDCQSHNLSLSPVHQRRTLQGFSGCPSGTQLLGILGLTEKSLLSAEGSSQIEGLSDFHVWTDPSAVGLEDLITDTASSHKNRKGACGRQKEEIVSQLRELIKVEADLVHEEVDAEQQLQLGNLSTGFERDIDANVFPSYEAGVFCWHGESSDPTNQIVPSDTPLRDFGEVVPDKHTSFTIPGTHANFNDQGKPSNSFSAENMSPAPPKATPYELTSHERDSALLRYREKKKTRRYDKHIRYESRKVRAESRMRIKGRFVKDETQK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01196 341 MobiDBLite consensus disorder prediction 257 294 - -
Cca02g01196 341 ProSiteProfiles Zinc finger B-box type profile. 49 95 IPR000315 GO:0008270
Cca02g01196 341 MobiDBLite consensus disorder prediction 257 279 - -
Cca02g01196 341 Pfam CCT motif 295 337 IPR010402 GO:0005515
Cca02g01196 341 ProSiteProfiles CCT domain profile. 295 337 IPR010402 GO:0005515
Cca02g01196 341 SMART bboxneu5 54 95 IPR000315 GO:0008270
Cca02g01196 341 SMART bboxneu5 6 53 IPR000315 GO:0008270
Cca02g01196 341 CDD Bbox1_BBX-like 11 53 - -
Cca02g01196 341 ProSiteProfiles Zinc finger B-box type profile. 6 53 IPR000315 GO:0008270
Cca02g01196 341 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 7 338 - -
Cca02g01196 341 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 7 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01196 Cca-Chr2 29601983 29604220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01196 3 310 C2C2-CO-like Transcription Factor Family AT2G47890 37.273 1.82e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Cca02g01196 CCT 2.8e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01196 - - gmx:100798117 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01196 02 29601983 29604220 Cca02g01196 02 29601983 29604220 ECH
Cca03g02660 03 47924655 47929443 Cca02g01196 02 29601983 29604220 PCT