Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01194 ATGGGGGAGGATGAAGTCGTAGTTGTAGTTTCAAATTTGGACAAATTCAATGAGCCAAAGGTTCCCAGTGGCAAGGTTCACACAAGAAAGGAAGCAGAGATTCAATTGGCAAGGGTTCGTGGAGGGGAGAATGGAGAATTGTTTGCAAGGTGGAGGTGTTTGTGGAGGCAAAGGGGAAACAAAGATGCATTTGCAAGGCAAAAAAGTGCTGGACCCTCACACACACCCACACTCCTCACTAACCCTTTCAACATTTTCACCGCAAGGCTTCCCCTTCCACCTCACATGCTTCCCATGGGAGGGGGTTCACGTTCTTTTCCTCCAAATTCCGGGGGTTTAGAGGAGTTGGGGGGAATTGGGATTGGGCTGCAAGGGGTTTTGAGAAAGGGGTTGAAGATGTCGTTTAGGAATGTAATCATGGAAAGTAAGGGAATTGAGGTGAAGTGTGGGTATAATTTGAGATCCAGGTCACAGTCACACAGTGATGCTATTGCCCAGGATAGTTTGGTAATGCTTGATGACCAAAGTTGTTGGGCTGGCATGCCCTCTGAGCTTTTGAGGGATGTGCTCATGAGGATAGAGGCCTCTGAGGATTCCTGGCCTGGCCGGAGACATGTCGTCGCCTGCGCCGGAGTTTGTCGCAGTTGGAGAGAAATCATGAAGGATATTGTCAAATCCCCTCAAGTATCCGGCCAGTTGACATTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTTCTTCAGTGCTATATTAAACGAAATCGCAGTAATCAAACATATTACCTGTTTTTTGGTTTAAACGAAGCCTCAACTGACGATGGCAAGTTCCTTCTTTCTGCACGCAAGTGTCGACGTGCAACTTATACTGATTTTAACATCTCTCTAAACTGCAATGATGTATCAAGAGGGAGTGGTACCTATATTGGGAAATTGAGATCAAACTTTCTGGGCACCAAATTCATCGTGTATGATGCTCATCTTCCAGTTAATGGAGCCAAATTTACAAAATCTCGTTCCACCAGACTAATTAGTCTCAAGCAAGTTTCTCCAAGACCTACCGGCAACTATCCCATTGCTCATGTCTCATATGATATGAATGTTATGGGCGCTAGGGGCCCTAGAATAATGCAATGTGTTATGGATGCCATCCCTGTGTCAGTTGTTGAACCTGGAGGTGCGGCCGCAACAGAGACTCAATTTCTACATAGCAGAATTGGTACTTCTCCATCCTTCCCTTTCAAAAGATCAAAACCAACCCGCAACAATCGCACATCAGTACCTTTAGCCTCTCAAAATGAGGGGACACTGGTATTACGGAACAAGTCTCCAAGGTGGCATGAACAACTTCAATGCTGGTGTCTGAACTTCAACGGGCGAGTGACAGTTGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCTGAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTATTCTACAGTTTGGAAAAGTCGGAAAGGATGTATTCACCATGGACTATCGTTATCCAATCTCTGCCTTTGAAGCCTTTGCAATATGCCTTAGCTGCTTTGACACCAAGATTGCTTGTGAATGA 1587 0.4562 MGEDEVVVVVSNLDKFNEPKVPSGKVHTRKEAEIQLARVRGGENGELFARWRCLWRQRGNKDAFARQKSAGPSHTPTLLTNPFNIFTARLPLPPHMLPMGGGSRSFPPNSGGLEELGGIGIGLQGVLRKGLKMSFRNVIMESKGIEVKCGYNLRSRSQSHSDAIAQDSLVMLDDQSCWAGMPSELLRDVLMRIEASEDSWPGRRHVVACAGVCRSWREIMKDIVKSPQVSGQLTFPISLKQPGPRDSLLQCYIKRNRSNQTYYLFFGLNEASTDDGKFLLSARKCRRATYTDFNISLNCNDVSRGSGTYIGKLRSNFLGTKFIVYDAHLPVNGAKFTKSRSTRLISLKQVSPRPTGNYPIAHVSYDMNVMGARGPRIMQCVMDAIPVSVVEPGGAAATETQFLHSRIGTSPSFPFKRSKPTRNNRTSVPLASQNEGTLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPENGVSEQAQENVILQFGKVGKDVFTMDYRYPISAFEAFAICLSCFDTKIACE 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01194 528 PRINTS Tubby superfamily signature 309 333 IPR000007 -
Cca02g01194 528 PRINTS Tubby superfamily signature 485 504 IPR000007 -
Cca02g01194 528 PRINTS Tubby superfamily signature 458 474 IPR000007 -
Cca02g01194 528 PRINTS Tubby superfamily signature 293 309 IPR000007 -
Cca02g01194 528 PRINTS Tubby superfamily signature 357 384 IPR000007 -
Cca02g01194 528 PRINTS Tubby superfamily signature 506 528 IPR000007 -
Cca02g01194 528 PRINTS Tubby superfamily signature 440 457 IPR000007 -
Cca02g01194 528 SUPERFAMILY Tubby C-terminal domain-like 227 528 IPR025659 -
Cca02g01194 528 Gene3D Tubby Protein; Chain A 236 528 IPR025659 -
Cca02g01194 528 PANTHER TUBBY-RELATED 133 527 - -
Cca02g01194 528 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 133 527 - -
Cca02g01194 528 Pfam F-box domain 178 224 IPR001810 GO:0005515
Cca02g01194 528 Pfam Tub family 239 523 IPR000007 -
Cca02g01194 528 MobiDBLite consensus disorder prediction 408 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01194 Cca-Chr2 29540771 29552508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01194 133 528 TUB Transcription Factor Family AT2G47900 67.150 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Cca02g01194 Tub 4.5e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01194 K19600 - gmx:100809257 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01194 02 29540771 29552508 Cca02g01194 02 29540771 29552508 ECH