Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01188 ATGCTTCCAAAGAATATTTCTGAAGTTGAGGTCTCTGATCTTTTCTCAAAGTATGGAACGATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAGACAAGTAAAGGATGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCTGATGCCGCTCTTGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCTTTGGTTGTTAAATGGGCAGATACTGAAAAAGAAAGACATGCTCGAAGGGCTCAGAAAGCACAGTCCCAAGTTTCTAATGTGCCACATGATGATCCTCAACACCCCTCATTATATGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAACGGATATGGTTATCAGGCTCCTGGGGGTTATGGGCTCATGCCATACCGTTTGCCACCAATGCAGAATCAACCAGGTTTCCATCATATGATGCCTCACATGAACCAAAGAAATGCAGTGAGGCCTGATCTAGGTCATAATATGGACCCTAGAAATTATCCTGCACCTCCTGCAAGTTACATAGGCTCTTATCCTGCTGTGCCAGGTATACAGCATCCAATGGCATATGCCAGAGGAATTGTAAGTCCAGGGCCAGTGAGTAGTTCTCCTGGTTCTGTTTCACCTGCAGGTGGAAATATCAACTCTTCATCATCAGGTGCCAGTAGAAGTTCCAGTGGTCAGATTGAAGGACCACCCGGTGCCAATCTATTTATTTATCACATACCTCAAGAATATGGAGATCAAGAGCTTGCAACTGCATTTCAACAGTTCGGTAGAGTTTTGAGTGCTAAAATTTTTGTTGATAAAGCAACTGGTGTAAGCAAATGTTTTGGGTTTGTTAGTTACGATACTCCAGAAGCTGCTCAAGCTGCCATTAGTATGATGAATGGTTGTCAATTGGGTGGTAAGAAACTAAAGGTTCAGCTTAAGAGGGACAACAAACAGAGTAAGCTTTATTGA 969 0.4231 MLPKNISEVEVSDLFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQADAALEAINGKHKMEGSSVPLVVKWADTEKERHARRAQKAQSQVSNVPHDDPQHPSLYGALPMGYVPPYNGYGYQAPGGYGLMPYRLPPMQNQPGFHHMMPHMNQRNAVRPDLGHNMDPRNYPAPPASYIGSYPAVPGIQHPMAYARGIVSPGPVSSSPGSVSPAGGNINSSSSGASRSSSGQIEGPPGANLFIYHIPQEYGDQELATAFQQFGRVLSAKIFVDKATGVSKCFGFVSYDTPEAAQAAISMMNGCQLGGKKLKVQLKRDNKQSKLY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01188 322 MobiDBLite consensus disorder prediction 202 231 - -
Cca02g01188 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 75 IPR000504 GO:0003723
Cca02g01188 322 Gene3D - 208 314 IPR012677 -
Cca02g01188 322 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 1 309 - -
Cca02g01188 322 CDD RRM3_CELF1-6 239 311 - -
Cca02g01188 322 MobiDBLite consensus disorder prediction 80 99 - -
Cca02g01188 322 PANTHER RNA BINDING PROTEIN 1 309 - -
Cca02g01188 322 CDD RRM1_2_CELF1-6_like 1 71 - -
Cca02g01188 322 SMART rrm1_1 238 311 IPR000504 GO:0003723
Cca02g01188 322 SMART rrm1_1 2 71 IPR000504 GO:0003723
Cca02g01188 322 Gene3D - 1 84 IPR012677 -
Cca02g01188 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 315 IPR000504 GO:0003723
Cca02g01188 322 SUPERFAMILY RNA-binding domain, RBD 2 317 IPR035979 GO:0003676
Cca02g01188 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 60 IPR000504 GO:0003723
Cca02g01188 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 309 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01188 Cca-Chr2 29478450 29482742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01188 230 321 Eukaryotic Initiation Factors Gene Family AT1G22760 34.043 2.07e-11 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01188 02 29478450 29482742 Cca02g01188 02 29478450 29482742 ECH
Cca03g02644 03 47785580 47795675 Cca02g01188 02 29478450 29482742 PCT