Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01183 ATGGGGTCCAAGCCCTGGCTCTATCCTGCTCCCACCTATCGGCCTATGGAAACCTATTGGGACACTGACGAGGACGCGCCCGGGCCTCGCTGTGGACACACCCTCACCGCCGTCGCCGCCACCAAGACTCATGGCCCCCGCTTGATCCTCTTCGGCGGCGCCACCGCCATTGAGGGAGGATCTTCCTCCGCTCCCGGCATTCGATTAGCTGGAGTCACCAATTCTGTTCATTCCTATGACGTTCAAACTAAAAAATGGACTAGTCTTAAACCAGCCGGAGAACCGCCGTCTCCTCGGGCTGCTCACGCCGCCGCTGCAGTTGGTACCATGGTTGTTTTTCAGGGTGGAATTGGTCCAGCTGGGCATTCTACGGATGATCTCTATGTGCTTGACTTGACCAACGATAAGTACAAATGGCACAGAGTCGTtgtacaagggcaaggacctggacctcgttatggccatgtaatggacttggTTGCTCAGAGATATTTAGTAACTGTCAGCGGAAATGACGGGAAAAGAGTTGTATCTGATGCATGGGCTTTGGATACTGCTCAAAAACCTTATGTGTGGCAGAAGCTGAACCCAGAAGGTGACAGACCTTCTGCGAGAATGTATGCAACTGCTAGTGCCCGCTCAGATGGAATGTTTTTACTCTGTGGTGGAAGGGACTCTTCTGGAGCTCCACTAGCAGATGCCTATGGACTACTCATGCATAGGAATGGCCAGTGGGAGTGGACCCTTGCACCTGGAGTTTCCCCTTCACCAAGGTATCAACATGCTGCGGTTTTTGTAGGTGCACGATTACATGTTACAGGAGGTGTTCTCAGGGGTGGACGGGCTGTGGAAGGTGAAGCATCCATTGCAGTATTGGACACTGCTGCTGGGGTTTGGTTGGACAGAAATGGCATTGTGTCCTCCTCACGCTCAAACAAAGGTCATGATTATGACCCTTCTTTGGAGCTTATGCGTCGTTGTCGCCATGCAGCAGCAGCTGTTGGTATTCATGTATTCATCTATGGTGGTCTAAGAGGAGATACACTACTAGATGATTTCTTACTGGCTGAAAATTCACCATTGCAGCCTGACATTAATTCTCCTTTGTTAACGTCTGAGAGAGCTTCACCCGTTACAAGCCCCAAACTTGGTCAATCTAACTTCAATTATAATTTAACAACACCAAATTTGGATGGTGGACCAGACATTCCCTCATCTGGTGGCTTAGGCATGGACAAAAATTCCTTGGAGAAACTGAGGGAAGCATCAGCTGCTGAAGCTGAGGCAGCGAGTGCTGTCTGGCAAGCTGTACATACTACTATATCAAGTAGTGCTGCTGAAGAAACATCTGTGTCAGATGACAACTCACAAGCTGCAGAAACAGCTTCAGATGGAAGTGACACAGAAGGAGATGTTCGCCTTCATCCTAGAGCTGTTGTAGTTGCTAAGGAGGCTGTTGGTAACCTAGGTGGTATGGTGAGGCAATTGTCGCTTGATCAATTTGAAAATGAAAGCAGACGCATGATTCCCATCAATAATGATTTACCATATCCTACGAAAAAGTTCACCAGGCAGAAATCTCCTCAGGGTTTACATAAAAAGATAATTTCAACTTTGCTTAGGCCTCGCAACTGGAAAGCTCCTGCAAACAGGCGGTTCTTCTTGGATTCTTATGAAGTGGGTGAACTTTGCTATGCTGCTGAGCAAATATTTATGCATGAACCAACTGTTCTTCAGCTGAAAGCTCCTGTCAAAGTATTTGGTGATCTTCATGGTCAGTTTGGTGATTTGATGCGGCTATTTGATGAATATGGATTTCCTTCTACCGCAGGAGACATCACGTATATTGACTACCTGTTTTTGGGAGATTACGTTGATCGAGGACAGCACAGCTTGGAAACCATTACCCTGCTACTTGCTCTTAAGATCGAATATCCTGATAATGTTCACTTGATACGCGGAAATCACGAAGCTGCTGACATAAATGCACTATTTGGCTTCCGTATTGAGTGCATTGAAAGAATGGGTGAAAATGATGGAATATGGGCATGGACGCGATTCAATCAACTTTTTAACTATCTTCCGCTAGCTGCTCTTATTGAAAAGAAAATTATCTGTATGCATGGTGGCATTGGAAGATCTATCCATTCAGTAGAACAAATTGAGAAGCTTGAAAGGCCCATAACAATGGATGCAGGATCTATTATTTTAATGGACCTTTTATGGTCCGATCCCACAGAGAATGATAGTGTTGAGGGGTTGAGACCAAATGCTAGAGGGCCAGGGCTTGTCACTTTTGGGCCTGACCGTGTCACAGAATTTTGTAAGAAAAATAAATTACAGCTCATTATAAGGGCCCATGAGTGTGTCATGGATGGTTTTGAACGATTTGCCCAGGGACAATTAATCACCCTTTTTTCTGCAACCAATTATTGTGGAACTGCAAACAATGCGGGAGCTATACTGGTAGTTGGCAGGGGTTTGGTTGTGGTTCCAAAATTGATTCATCCCTTACCACCTCCCCTTCAGTCTCCTGAGACATCTCCAGAGCGTGTTATGGATGAGACATGGATGCAGGAGCTTAACATTCAGCGGCCACCAACTCCTACTCGAGGTCGACCCCAGCCTGACCTTGACCGTGGCTCACTAGCATACATATGA 2661 0.4573 MGSKPWLYPAPTYRPMETYWDTDEDAPGPRCGHTLTAVAATKTHGPRLILFGGATAIEGGSSSAPGIRLAGVTNSVHSYDVQTKKWTSLKPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKYKWHRVVVQGQGPGPRYGHVMDLVAQRYLVTVSGNDGKRVVSDAWALDTAQKPYVWQKLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGAPLADAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGVLRGGRAVEGEASIAVLDTAAGVWLDRNGIVSSSRSNKGHDYDPSLELMRRCRHAAAAVGIHVFIYGGLRGDTLLDDFLLAENSPLQPDINSPLLTSERASPVTSPKLGQSNFNYNLTTPNLDGGPDIPSSGGLGMDKNSLEKLREASAAEAEAASAVWQAVHTTISSSAAEETSVSDDNSQAAETASDGSDTEGDVRLHPRAVVVAKEAVGNLGGMVRQLSLDQFENESRRMIPINNDLPYPTKKFTRQKSPQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMHEPTVLQLKAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPDNVHLIRGNHEAADINALFGFRIECIERMGENDGIWAWTRFNQLFNYLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTEFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPPLQSPETSPERVMDETWMQELNIQRPPTPTRGRPQPDLDRGSLAYI 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01183 886 PRINTS Serine/threonine phosphatase family signature 583 610 IPR006186 GO:0016787
Cca02g01183 886 PRINTS Serine/threonine phosphatase family signature 618 645 IPR006186 GO:0016787
Cca02g01183 886 PRINTS Serine/threonine phosphatase family signature 651 675 IPR006186 GO:0016787
Cca02g01183 886 PRINTS Serine/threonine phosphatase family signature 689 715 IPR006186 GO:0016787
Cca02g01183 886 PRINTS Serine/threonine phosphatase family signature 719 746 IPR006186 GO:0016787
Cca02g01183 886 PRINTS Serine/threonine phosphatase family signature 779 799 IPR006186 GO:0016787
Cca02g01183 886 PRINTS Serine/threonine phosphatase family signature 801 817 IPR006186 GO:0016787
Cca02g01183 886 MobiDBLite consensus disorder prediction 366 387 - -
Cca02g01183 886 CDD MPP_Bsu1_C 535 837 IPR041758 -
Cca02g01183 886 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 886 - -
Cca02g01183 886 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 886 - -
Cca02g01183 886 Gene3D - 195 359 IPR015915 GO:0005515
Cca02g01183 886 SMART pp2a_7 555 841 IPR006186 GO:0016787
Cca02g01183 886 MobiDBLite consensus disorder prediction 394 413 - -
Cca02g01183 886 Pfam Galactose oxidase, central domain 45 106 - -
Cca02g01183 886 Pfam Galactose oxidase, central domain 115 155 - -
Cca02g01183 886 MobiDBLite consensus disorder prediction 861 886 - -
Cca02g01183 886 SUPERFAMILY Kelch motif 70 356 IPR015915 GO:0005515
Cca02g01183 886 Gene3D - 10 194 IPR015915 GO:0005515
Cca02g01183 886 MobiDBLite consensus disorder prediction 443 473 - -
Cca02g01183 886 ProSitePatterns Serine/threonine specific protein phosphatases signature. 652 657 IPR006186 GO:0016787
Cca02g01183 886 MobiDBLite consensus disorder prediction 443 464 - -
Cca02g01183 886 SUPERFAMILY Metallo-dependent phosphatases 536 847 IPR029052 -
Cca02g01183 886 PIRSF STPPP_BSU1 1 886 IPR012391 GO:0004721|GO:0009742
Cca02g01183 886 Pfam Calcineurin-like phosphoesterase 583 790 IPR004843 GO:0016787
Cca02g01183 886 Gene3D - 518 856 IPR029052 -
Cca02g01183 886 Pfam Serine-threonine protein phosphatase N-terminal domain 534 581 IPR031675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01183 Cca-Chr2 29409214 29419743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01183 584 782 Calmodulin-binding Proteins AT5G63870 33.043 6.88e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01183 K01090 - gmx:100805538 1686.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01183 02 29409214 29419743 Cca02g01183 02 29409214 29419743 ECH