Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01175 ATGAACACATTGCATCCTCTCAGTGTCCTCAAGCTCTCCAAAAGAATGAGCACCAGCATGAGGGAGTCCATTCTCCCCAGTTGTTTCATAGATGCAGCTGCTTCACCCTGCAGGTCACCTTGGAAGATTTTTACCCACCATGAGATACAAGTTGCAACCAATTCTTTTAGCCAAGAAAATTTGATTGGGAAGGGTGGTTATGCTGAAGTTTACAAAGGGTGTTTGGCAAATGGACAGCTAGTGGCAATTAAAAGGTTAACAAGAGGAACAGCTGATGAAATCATAGGGGACTTCTTATCAGAACTTGGGGTAATGGCACATGTAAACCATCCCAATACTGCTAAACTTGTTGGCTATGGGGTGGATGGTGGAATGTATCTAGTTCTTGAATTGTCTGAAAAAGGGAGCCTAGCTTCAGTTCTTTATGGTTCTAAGGAAAAACTACAATGGTGTAATAGGCACAAAATTGCATTAGGAACAGCCAAGGGTATATTATATCTTCATGAGGGTTGTCACAGAAGAATTATCCACAGGGATATAAAAGCTGCCAATATCTTGCTTACAGAGGACTTTGAGCCTCAGATTTGTGATTTCGGGCTGGCAAAATGGCTGCCAGAAAATTGGACTCACCACACGGTTTCAAAATTTGAAGGAACTTTCGGTTACCTAGCACCTGAATACTTGCTGCATGGCATAGTAGATGAGAAAACGGACGTATTTGCCTTTGGTGTATTGCTATTAGAATTAGTGAGTGGGAGGCGAGCACTTGATTATTCACAGCAAAGTCTTGTGTTGTGGGCAAAACCATTGCTCAAAAAGAATGATGTCATGGAGCTTATTGATCCTTCACTAGCAGGTGACTTTGACTCTCGGCAGATGAATCTTATGCTCTTGGCTGCTTCTTTATGCATACATCAGTCCTCAATTCGTCGCCCCTCTATAAGACAGGTTGTACAGCTTCTGAATGGCAACCTTAGCTGCTTTAAGGGCATGAAGAAAACTCGAATGCCCTTCTTTCGAAGAGTGTTCCGGGAAGAACTCCTTGATTCTCAATAG 1056 0.4261 MNTLHPLSVLKLSKRMSTSMRESILPSCFIDAAASPCRSPWKIFTHHEIQVATNSFSQENLIGKGGYAEVYKGCLANGQLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKLQWCNRHKIALGTAKGILYLHEGCHRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDVMELIDPSLAGDFDSRQMNLMLLAASLCIHQSSIRRPSIRQVVQLLNGNLSCFKGMKKTRMPFFRRVFREELLDSQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01175 351 Gene3D Phosphorylase Kinase; domain 1 31 130 - -
Cca02g01175 351 Gene3D Transferase(Phosphotransferase) domain 1 133 335 - -
Cca02g01175 351 ProSiteProfiles Protein kinase domain profile. 56 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01175 351 PANTHER OS08G0249100 PROTEIN 1 349 - -
Cca02g01175 351 ProSitePatterns Protein kinases ATP-binding region signature. 62 84 IPR017441 GO:0005524
Cca02g01175 351 PANTHER PROTEIN KINASE FAMILY PROTEIN 1 349 - -
Cca02g01175 351 SUPERFAMILY Protein kinase-like (PK-like) 37 321 IPR011009 -
Cca02g01175 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Cca02g01175 351 Pfam Protein kinase domain 57 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01175 351 SMART serkin_6 56 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01175 Cca-Chr2 29298369 29302130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01175 43 317 Trihelix Transcription Factor Family AT1G68690 42.308 2.11e-69 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Cca02g01175 Pkinase 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01175 - - gmx:100802873 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01175 02 29298369 29302130 Cca03g02980 03 51250573 51254441 ECH
Cca02g01175 02 29298369 29302130 Cca02g01516 02 33751042 33754372 ECH
Cca02g01175 02 29298369 29302130 Cca02g01175 02 29298369 29302130 ECH
Cca02g01175 02 29298369 29302130 Cca03g02071 03 40975849 40979703 ECH
Cca08g02184 08 55093125 55096703 Cca02g01175 02 29298369 29302130 ECH