Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01174 ATGAAcctctttctctttctctttctcttcccctccctctccctctccctctCCGCCACGTGTCCCCTCAACTTCACCATCCTTGGCACCGAGAAGCCCTCCTCCTTCGACTCCTCCAAGTGCCCTGTCATAAAGCAGGCCTTCCGCCTCGTACAGTCGGACTACCTCCGGCGCACCGACCTCTTCCTCCCTCCCCAGAACGCCTCGGAGGCATGCTGGCAAAGTTTCCAGTCCTACGTTAACCTCTTCGACCCCACCTACGACATTCGCTCCTCCTGCGGCTTCCAAACCTCCTCCATCTCCCAAGGCTGCGCCAACGTCACCACCCGACAACAGTTCGAGTCCCTGGTCCCACAATCCACCCTCCAGAAGACGCGCACCCAATGCAACCAATCCCTCGAAAACAACTCCCCCTGCGCCATCTGCCTCACCTCACTCTCCTCCTTCCCTTCCTTCGGACAATCCCTCGCCAACCTCACCGACTGCAccgcctacgcctccatctacgccgccgccttcgccaaccgcttcggccccgacgaccccggcaccgccAAGTGCTTATTCTCCCTCGATTTCCCCTCCCACCACTCCTCCAACAAAAAAAAGATTctttttcctcttctttctcttttctccctcctcgccttctccctcctccttctcgccttTTGGGCTTGTTGCAAGTCTCGCCGCAAAACCGACTCCGATAACAAGGATCTTCGTGTTGCCGAGATGGGTTTGGTTTCTGGACTTGATTCCATGGACCAAAGCACCACTTTGATTAAGTTCACCTTTGAAGATGTTAAAAAGGCCACTAAGAATTTCTCTAGGGATAACATAATCGGGAGAGGGGGTTACGGGAATGTCTATAAAGGCTTGTTGCCTGATGGGAGTGAGGTCGCGTTTAAGAGGTTCAAGAATTGTTCTGCTTCGGGTGATGCCAGCTTCACTCACGAAGTTCAGGTTATTGCTAGTATTCGCCATGTCAATCTTGTTGCCTTGAGAGGTTATTGCTCCGTCACTACTCGTTTAGAGGGTTACCAGAGGATTATTGTTTGTGATTTGGTCAAAAATGGAAGTCTTCATGACCATTTGTTTGGTTCCAATGGGGTGAGACTCAGTTGGCCAATTCGTCAGAGTATTGCTCTTGGCACGGCTAGGGGGTTGGCTTATTTGCATTATGGGGCTCAACCTTCCATCATTCATAGAGATATTAAAGCTAGTAATATACTTCTTGATGACAAGTTTGAAGCTAAGGTAGCAGATTTTGGATTAGCCAAGTTTAATCCCGAGGGGATGACGCATATGAGCACTCGGGTGGCTGGAACCATGGGGTATGTTGCTCCTGAATATGCTTTGTATGGGCAATTGACAGAGAGAAGTGATGTGTTCAGTTTCGGGGTTGTGCTTCTTGAGCTTTTGAGTGGGAGGAAGGCTCTTCAGATGAACAATGATGGTCAACCCTCTGCGTTGACTGATTGGGCTTGGTCGTTGGTTAGAACGGGGAAGGCTTTGGATGTTGTTGAAGATGGCATGCCACAGCCTGCTTCACCACAAGTTCTTGAGAAGTATGTGTTAATTGCTGTTCTTTGTTCTCATCCACAGTTATATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGATGGAGACTGATGAGTCAGTGCCTTCAATTCCTGAACGGCCAATCCCTCTTGTTGCTGGGAGGCTTGATATTGAGAGATCTGTGAGCAGTAGTGGCTCGGGTCAGCTCTCTAGTCCAACAGGTTATCAGTCATATACTCTCGAAAGTGACCACCAATCTTCTAATTCTAGGGAAGACAGAAGCTCAAGCTCCAGGATTTTGAGTACAGATTGA 1860 0.4435 MNLFLFLFLFPSLSLSLSATCPLNFTILGTEKPSSFDSSKCPVIKQAFRLVQSDYLRRTDLFLPPQNASEACWQSFQSYVNLFDPTYDIRSSCGFQTSSISQGCANVTTRQQFESLVPQSTLQKTRTQCNQSLENNSPCAICLTSLSSFPSFGQSLANLTDCTAYASIYAAAFANRFGPDDPGTAKCLFSLDFPSHHSSNKKKILFPLLSLFSLLAFSLLLLAFWACCKSRRKTDSDNKDLRVAEMGLVSGLDSMDQSTTLIKFTFEDVKKATKNFSRDNIIGRGGYGNVYKGLLPDGSEVAFKRFKNCSASGDASFTHEVQVIASIRHVNLVALRGYCSVTTRLEGYQRIIVCDLVKNGSLHDHLFGSNGVRLSWPIRQSIALGTARGLAYLHYGAQPSIIHRDIKASNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQMNNDGQPSALTDWAWSLVRTGKALDVVEDGMPQPASPQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETDESVPSIPERPIPLVAGRLDIERSVSSSGSGQLSSPTGYQSYTLESDHQSSNSREDRSSSSRILSTD 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01174 619 Pfam SPARK 18 149 IPR043891 -
Cca02g01174 619 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 14 604 - -
Cca02g01174 619 CDD STKc_IRAK 282 551 - -
Cca02g01174 619 SMART serkin_6 276 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01174 619 MobiDBLite consensus disorder prediction 575 600 - -
Cca02g01174 619 Pfam Protein kinase domain 277 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01174 619 Gene3D Phosphorylase Kinase; domain 1 244 355 - -
Cca02g01174 619 Gene3D Transferase(Phosphotransferase) domain 1 357 558 - -
Cca02g01174 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
Cca02g01174 619 ProSitePatterns Protein kinases ATP-binding region signature. 282 304 IPR017441 GO:0005524
Cca02g01174 619 ProSiteProfiles Protein kinase domain profile. 276 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01174 619 PANTHER OS01G0253100 PROTEIN 14 604 IPR045271 GO:0004714|GO:0006468
Cca02g01174 619 MobiDBLite consensus disorder prediction 575 619 - -
Cca02g01174 619 SUPERFAMILY Protein kinase-like (PK-like) 259 563 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01174 Cca-Chr2 29278082 29280502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01174 5 605 Receptor kinase-like Gene Family AT2G48010 62.993 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Cca02g01174 Pkinase 3.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01174 - - gmx:100800760 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01174 02 29278082 29280502 Cca02g01174 02 29278082 29280502 ECH
Cca03g02070 03 40956503 40958857 Cca02g01174 02 29278082 29280502 PCT