Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01162 ATGTCTATTAGAAGATCCCCATTCCCTCGTCTCCTCCTCAACAATGTGTCTTGCATGAGAAATGCCCAGCAAGTTCTGCGTCATGTGAATGTCTCTATCCATGATGGTGGGGCACTTGTGCTAACAGGTGCAAATGGCTCGGGAAAGACAACTTTCTTGCGCATGTTAGCTGGGTTTTCCCGTCCTTCCGCGGGTGAAATCCTTTGGAATGGTCATAACATTCAAGAATCTGCAATATTCCATCAGTATAAGCTTCAGCTTAATTGGCTCTCTCTCAAGGATGCCATTAATGATAAATTTACGGTTCTTAACAATGTACAATGGTTTGAACTTCTTGAAAGCAAGGAAGGGAAGGCTTTGCCTGCACTTGAGTTGATGGGACTAGGAAGATTAGCCAATGAAAAACCACGGATGCTATCTATGGGCCAGCGGAAGAGATTGCAACTTGCCAGATTGCTTGCAATTGATCGCCCCATATGGTTGCTAGATGAGCCTTCAGTTGCACTAGATGATGATGGTGTGAAGTTACTTGAGTATATCATTGCAGAACATAGGAAACACGGAGGAATTGTGATTGTGGCGACCCATCTACCCATTCAGATAGAAGATCCCATGATCTTGAGGCTTCCACCAAGGTTTCCAAGAAGGATGACCCTAGTGGATATGCTTGACCGGGCAGATATCAGTTGA 690 0.4478 MSIRRSPFPRLLLNNVSCMRNAQQVLRHVNVSIHDGGALVLTGANGSGKTTFLRMLAGFSRPSAGEILWNGHNIQESAIFHQYKLQLNWLSLKDAINDKFTVLNNVQWFELLESKEGKALPALELMGLGRLANEKPRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDDGVKLLEYIIAEHRKHGGIVIVATHLPIQIEDPMILRLPPRFPRRMTLVDMLDRADIS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01162 229 Pfam ABC transporter 26 166 IPR003439 GO:0005524
Cca02g01162 229 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 9 223 IPR005895 GO:0017004|GO:0022857
Cca02g01162 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 197 IPR027417 -
Cca02g01162 229 Gene3D - 6 206 IPR027417 -
Cca02g01162 229 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 228 IPR003439 GO:0005524
Cca02g01162 229 SMART AAA_5 35 223 IPR003593 -
Cca02g01162 229 TIGRFAM ccmA: heme ABC exporter, ATP-binding protein CcmA 13 207 IPR005895 GO:0017004|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01162 Cca-Chr2 29079700 29084668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01162 24 178 Calmodulin-binding Proteins AT2G36910 25.862 4.67e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01162 - - gmx:100796586 413.69