Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01161 ATGGTTCCTTGGGGTGGCGTCAGTTGCTGTTTGAGTGCTGCTGCTCTCTACCTTCTCGGCAGAAGCAGTGGCAGGGATGCGGAAATTCTTAAATCCGTTACGAGGGTCAATCAATTGAAGGAACTAGCTCAACTTTTAGATGCAGAAATATTACCTTTGATTGTAACGATTTCTGGAAGAGTTATCTCTGAAACCCCAATTAACTGCGATTTCAGTGGCTTAAGAGGTGTAATAGTTGAAGAAACAGCAGAGCAACATTTTCTAAAACACAATGATGCTGGTTCTTGGATACAAGATTCCGCTTTGATGCTATCAATGAGTAAAGAGGTTCCTTGGTATCTGGATGATGGGACTGATCGTGTGCATGTGGTTGGAGCTCGGGATGCCACTGGTTTTGTATTACCTGTTGAAAGTGAGGCATTTGAAGAGTCAGGTCGGTCACTTGTGCGTGGAACATTGGATTATCTCCAAGGTCTCAAGATGCTAGGAATCAAGAGAATTGAGCGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGCGAGGCTGCTAAAGATGATGTTGGGACCATTCGAATTCAGCGACCCCACAAAGGCCCATTTTATGTCTCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAGGTGGTATAAGTATGCTTCTGTGGGCTTGACCGTCTTTGGTGCTTATCTGATAGCCAGGCATGCTATTGAGTACATATTGGAAAGACGGCGCCGCAGCGAAATTCAAAAAAGGGTTCTTGCTGCAGCCTCTAAGAAGTCAGGACAAAATAATGAAGTTGAAAAGGCTGACGGCTTATCAGATGGTGCTAAAAGGGATCGCTTGATGCCAGATTTGTGTGTGATATGCCTCGAGCAGGAATATAATGCTGTTTTTGTTTCGTGTGGGCATATGTGCTGCTGTACGGCTTGTTCTTCACACTTGACCAATTGTCCTCTCTGCCGGCGACAGATAGAGAAGGTTGTGAAGACTTTCCGTCATTGA 1020 0.448 MVPWGGVSCCLSAAALYLLGRSSGRDAEILKSVTRVNQLKELAQLLDAEILPLIVTISGRVISETPINCDFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTDRVHVVGARDATGFVLPVESEAFEESGRSLVRGTLDYLQGLKMLGIKRIERVLPVGTSLTVVGEAAKDDVGTIRIQRPHKGPFYVSPKTIDQLIANLGKWARWYKYASVGLTVFGAYLIARHAIEYILERRRRSEIQKRVLAAASKKSGQNNEVEKADGLSDGAKRDRLMPDLCVICLEQEYNAVFVSCGHMCCCTACSSHLTNCPLCRRQIEKVVKTFRH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01161 339 SUPERFAMILY RING/U-box 291 333 - -
Cca02g01161 339 ProSiteProfiles Zinc finger RING-type profile. 292 327 IPR001841 -
Cca02g01161 339 CDD RING-HC_LRSAM1 291 330 - -
Cca02g01161 339 Pfam E3 Ubiquitin ligase 85 233 IPR022170 GO:0004842|GO:0006996|GO:0016567
Cca02g01161 339 Pfam Zinc finger, C3HC4 type (RING finger) 290 333 - -
Cca02g01161 339 PANTHER - 1 305 IPR044231 GO:0004842|GO:0016567
Cca02g01161 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 1 305 - -
Cca02g01161 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 338 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01161 Cca-Chr2 29069598 29074558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01161 1 271 C3H Transcription Factor Family AT1G63900 75.092 2.99e-151 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01161 K15688 - gmx:100803252 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01161 02 29069598 29074558 Cca02g01161 02 29069598 29074558 ECH