Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01159 ATGCTACNNNNNNNNNNNNNNNNNNNGAAGAGCGTGGAGGACAATGCTACGTACGTGTCGCTCTTCATCGCGCTCGCAAGCGAAGGGACGGATGTTAGGGCGCTTTTTGAGCTGACCCTTTTAGATCAGAGTGGGAAGGAGAGGCACAAGGTGCATAGCCATTTCGAGAGGACCCTCGAGAGTGGACCCTACACGTTAAAATACCGTGGTAGCATGTGGGGTTACAAGCGGTTTTTTAAGAGAACAGCACTAGAGACATCAGATTACCTTAAAGATGATTgtcttagtgttaattgtagtgttggtgttgtgAAGTCACACACAGAGGGCCCTAAAATATATGAGATCCCAATTCCGCATTCTAACATTGGTAAGCAATTTGGGAAGCTACTAGAAAGTGGGAAAGACAGTGATGTGAGTTTTGAAGTGAATGGAGAAATTTTTGCTGCTCATAAATTGGTTCTAGCAGCTCGCTCACCTGTTTTCAGGGCCCAACTTTTTGGTCCTATGAAAGACCAGAATACCCAATGTATAAAAGTTGAAGACATAGAGGCTCCAGTTTTCAAGgcattgctccatgttatatactgggattcactgcctgacatgcaagagcttactgggttaagctcaaaatgggctactaccttgatggctcagcatctgctagcagcagctgatcggtatgggttagagagacttaggctgatgtgtgaagcaagtctatgtgaagatgttgcaataaacactgttgctacgactctagccttggcagagcaacaccattgtttccaactgaaaGCAGTCTGTCTGAAATTCGTTGCAAGGCCTGAAAATCTCAGAGCTGTGATGCAAACTGATGGTTTTGAGTACTTGAAGGAAAGTTGCCCATCTGTTTTGACTGAGCTTTTGGAGTATGTGGCTAGATTTACTGAGCATTCGGACTACTTATGCAAGCACAGGAATGAAGCAGTACTTGATGGCAGCGACACAAATGGAAGGCGGGTGAAGCAAAGGCTATAG 1023 0.3255 MLXXXXXXXKSVEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRTALETSDYLKDDCLSVNCSVGVVKSHTEGPKIYEIPIPHSNIGKQFGKLLESGKDSDVSFEVNGEIFAAHKLVLAARSPVFRAQLFGPMKDQNTQCIKVEDIEAPVFKALLHVIYWDSLPDMQELTGLSSKWATTLMAQHLLAAADRYGLERLRLMCEASLCEDVAINTVATTLALAEQHHCFQLKAVCLKFVARPENLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDYLCKHRNEAVLDGSDTNGRRVKQRL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01159 340 ProSiteProfiles MATH/TRAF domain profile. 1 101 IPR002083 GO:0005515
Cca02g01159 340 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 8 106 IPR008974 GO:0005515
Cca02g01159 340 ProSiteProfiles BTB domain profile. 137 196 IPR000210 GO:0005515
Cca02g01159 340 Gene3D Potassium Channel Kv1.1; Chain A 113 240 IPR011333 -
Cca02g01159 340 SMART BTB_4 137 246 IPR000210 GO:0005515
Cca02g01159 340 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 10 319 IPR045005 GO:0016567
Cca02g01159 340 SUPERFAMILY TRAF domain-like 13 103 - -
Cca02g01159 340 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1-LIKE 10 319 - -
Cca02g01159 340 SUPERFAMILY POZ domain 114 244 IPR011333 -
Cca02g01159 340 Pfam BTB/POZ domain 128 244 IPR000210 GO:0005515
Cca02g01159 340 CDD BACK_AtBPM-like 243 306 IPR034090 -
Cca02g01159 340 CDD MATH 14 101 IPR002083 GO:0005515
Cca02g01159 340 CDD BTB_POZ_BPM_plant 123 243 - -
Cca02g01159 340 Gene3D - 246 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01159 Cca-Chr2 29033055 29040543 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca02g01159 BTB 2.7e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01159 K10523 - gmx:100811065 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01159 02 29033055 29040543 Cca02g01159 02 29033055 29040543 ECH
Cca03g02086 03 41120212 41125399 Cca02g01159 02 29033055 29040543 PCT