Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01152 ATGACGATGTCAATGTTTATGTGCAGAGTAGGAGAACCCCTAGTAAACGTGCCTTGCAGTGGGAAAAAAATGAATGTGAGGCAAATTGAGAAAGAGAAGGTGGTGGTGGTAATGGGAGGCACAGGGGCAGGGAAGTCAAGGCTTTCCGTTGACCTTGCCACGTGTTTCCCATCCGAAATCATAAACTCGGACAAAATCCAAGCCTACGAGGGGCTCGACATAGTCACAAACAAAATCTCCAAGGAGGACCAACGTGGCGTGCCGCACCACATTCTCGGAACACAAAACCCCAACACCCACTTCTCAGCCCTTGATTTCTGCCACATGTCCTTATCGGCCCTTGATTCCATCACGGCACGCCACCGCCTCCCAATCATCGTGGGGGGCTCCAACTCCTATCTGGAGGCCCTCATCGACGACGACGATTACAAGTTCCGCTCGCGCTACGACTTTTGTTGCCTCTGGGTCGACGTCGCAATGCCGGAGCTCCAATCCTACGTGGCAGACCGGGTCGACCAAATGCTTTGCAACGGAATGTTGAATGAGTTGAGACCCTTTTATAGTCCTAACGGGGAGTATTCGCAGGGGGTTAGACGGGCCATTGGAGTCCCCGAATTCGACGAGTATTTCCGGAGGGAGGGGTTTGTGGAGGAGGAAACGAGGCAGAGGTTGTTGGAACGCTCGATTAAGGAAGTGAAATTGAACACGTGCATGTTGGCCATGAAGCAGTTGGGCAACATTCGGAGGCTGAGGAATGTTAAGAGCTGGGAAATTCAGCGGTTGGATGCCACGCCCGTGTTTCGGAAGCGTGGGGACGAAGCAAACCAGGCCTGGAAGAAGCTGGTGGCGGAGCCTAGTGCTAGGATCGTTGCTCGCTTTCTCTATAACACCACCCATACTCATACTGCTAACGCCTTTTCTCCACTTAGATTGCCCACTGCACAAACCGTTATGCCTGCCCCTGCCGCAACGTTAACGTGCTAG 984 0.5295 MTMSMFMCRVGEPLVNVPCSGKKMNVRQIEKEKVVVVMGGTGAGKSRLSVDLATCFPSEIINSDKIQAYEGLDIVTNKISKEDQRGVPHHILGTQNPNTHFSALDFCHMSLSALDSITARHRLPIIVGGSNSYLEALIDDDDYKFRSRYDFCCLWVDVAMPELQSYVADRVDQMLCNGMLNELRPFYSPNGEYSQGVRRAIGVPEFDEYFRREGFVEEETRQRLLERSIKEVKLNTCMLAMKQLGNIRRLRNVKSWEIQRLDATPVFRKRGDEANQAWKKLVAEPSARIVARFLYNTTHTHTANAFSPLRLPTAQTVMPAPAATLTC 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01152 327 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 25 301 - -
Cca02g01152 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 142 IPR027417 -
Cca02g01152 327 Gene3D - 31 294 IPR027417 -
Cca02g01152 327 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 160 258 - -
Cca02g01152 327 Pfam IPP transferase 146 248 - -
Cca02g01152 327 Pfam IPP transferase 67 140 - -
Cca02g01152 327 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 25 301 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01152 Cca-Chr2 28946743 28947817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01152 147 300 C2H2 Transcription Factor Family AT2G27760 28.729 1.44e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01152 K10760 - gmx:100803964 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01152 02 28946743 28947817 Cca02g01152 02 28946743 28947817 ECH
Cca03g02095 03 41243766 41244915 Cca02g01152 02 28946743 28947817 PCT