Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01151 ATGGCGATGTCCTTGGAGTGCAAACACCAGAATCACAGTACTATTGGCAGCACTCCACAATGCACATTGCGTGCGTACGTAGCTGGCAATAACAGAGCATCAAGAAGCAGAGCAGAAACAGAGCACGCTCACTCGCAACCGCAAACCCTACTACGCTCACTCTTTCTCCTCTTCATTTCTACAACATTCTCCTCACAAAATCAAACCCATTACTTTGGCTTCCAAAATATTGCAATCCCAGCACCTTTGCTTTCATTTGGTGTAATGGAAGAGCAAAGTAACCAAGAGAACCATGTGCAACTAATGTCCTGTGACACTGGGGGAACCAGCAATGATGTCTCTTATTCAGCTGAGCCTCATCTATTTCCCAACCCAAAATTTGTCACTGCAGCATCTTCTGGCAGAAATGGAAGCCACTGGACTTGCCTCCCAAAGCCATCTCACAACTATGTAGAGTATCTTTCAGAATCCTCAACTTATCTGCCAAACTCTTCCACTGAATACATGTTTGGGAACAGTTACCTGCCTCTTGGAAACATCAATGATGGTAATGGGGTCAGTGGAACAGACAGAAACTTCTTTTACAATGATCCAGGAAAAGTTTGTGCCTTTAAGCCTATTGCTTCTTCTAGTGATGACCTTCATATTAGGAAGTTGGGGTTTTGGAGGGGTGATGAAGGAGAGGAAGTAATTAAAGTTGAAACTGAAAGTGGTCAAAATCTTCTTTATCCTGAGAGTCATGATTCATGGACAGCAGATTCAGTTGGAGATAAGCATAATCCAATGGTAATGGTTGGTGCACCTGCTTTACTTCCAAAACAAGGATGCAGCTCCTCAAAACAGAAAGCACGTGTCACTGACCGTCAACGCAGGCAACGTATTGCTGACAACCTCAAAGCCTTACACGAATTGCTTCCAAATCCAGCAGAGGGAAGTCAAGCGTACGTACTAGACGATATAATCGACTATGTCAAATATTTGCAGCTTCAAATAAAGGAACAAAGTGGAAGTAGATTGCAAGCGGACTCAACTGCTATACCACTAGTTTTTCATGAGGGTTACGGCCATTATATTAATCAACAAATGCTCAATGAACCCCTTGAGGAGATAATTGGGAAACTACTTGAAGAACATTCAGCAGCAGCTGGTCAGCTACTAGAGAGTAAGGGTCTTTTTCTTCTGCCTATGGCTTTGGTTGATGAGTTGGATGAAGCCATGCAAATGTTTGGCGGGAGTGCACTTGTCTGA 1248 0.4343 MAMSLECKHQNHSTIGSTPQCTLRAYVAGNNRASRSRAETEHAHSQPQTLLRSLFLLFISTTFSSQNQTHYFGFQNIAIPAPLLSFGVMEEQSNQENHVQLMSCDTGGTSNDVSYSAEPHLFPNPKFVTAASSGRNGSHWTCLPKPSHNYVEYLSESSTYLPNSSTEYMFGNSYLPLGNINDGNGVSGTDRNFFYNDPGKVCAFKPIASSSDDLHIRKLGFWRGDEGEEVIKVETESGQNLLYPESHDSWTADSVGDKHNPMVMVGAPALLPKQGCSSSKQKARVTDRQRRQRIADNLKALHELLPNPAEGSQAYVLDDIIDYVKYLQLQIKEQSGSRLQADSTAIPLVFHEGYGHYINQQMLNEPLEEIIGKLLEEHSAAAGQLLESKGLFLLPMALVDELDEAMQMFGGSALV 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01151 415 Gene3D - 277 345 IPR036638 GO:0046983
Cca02g01151 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 278 327 IPR011598 GO:0046983
Cca02g01151 415 Pfam Helix-loop-helix DNA-binding domain 280 328 IPR011598 GO:0046983
Cca02g01151 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 278 340 IPR036638 GO:0046983
Cca02g01151 415 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 101 399 - -
Cca02g01151 415 CDD bHLH_AtbHLH_like 286 333 IPR045239 -
Cca02g01151 415 PANTHER TRANSCRIPTION FACTOR BHLH66-LIKE ISOFORM X1 101 399 - -
Cca02g01151 415 SMART finulus 284 333 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01151 Cca-Chr2 28934569 28941021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01151 285 405 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 39.837 1.72e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g01151 HLH 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01151 - - gmx:100788949 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01151 02 28934569 28941021 Cca02g01151 02 28934569 28941021 ECH