Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01142 ATGGCTGCGCCACTAGGCAATAGGCTTCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCACTGGACATATAGCCTCTTCTGGCAACTTTGTCCACAACAAGTGATTCTGGTTTGGGGTGATGGGTACTACAATGGGGCAATTAAGACTAGGAAGACGGTGCAACCAATGGAGGTGAGTGCTGAGGAGGCGTCTCTTCAAAGAAGCCAGCAACTTAGAGAGCTCTATGAATCATTGTCTGCCGGAGAGACGAACCCGCCGACTCGCCGGCCTTGCGCTGCCTTGTCACCGGAGGACTTAACAGAATCCGAATGGTTCTATCTCATGTGTGTCTCATTCACCTTTCCTCCTGGTGTTGGGTTGCCCGGAAAGGCATATGCTAGGAGGCAGCATGTATGGCTCACAGGTGCAAACGAGGCAGACAGCAAAACATTTTCAAGAGCTATTCTAGCCAAGtttgtgatattcattatGCAGACCGTGGTGTGCATTCCTTTATTGGACGGCGTGGTTGAGTTGGGCACAACGGATAAGGTTCAAGAAGACCTTAGCTTCGTCCAACACGTCAAGAGCTTCTTCATAGACCACAACAGCCCTCTGCCGCCGAAGCCTGCCCTGTCGGAGCACTCAACCTCCAACCCCACCTCCTCCTCCGACCACATTCCCGCCGTCATGTACACCGTCGCAGACCCTCCCGCCGCCAACCCCGCCCTCGACGACATGgacgaagaggaagaggaagaggacgaggacgacgaggaggaggaagaggaggaagcggaaTCCGGCTCCGACGAGGAAACGGGGAGGCGCATGGCCGGTGGAACTCCGGTGCCGGACATGGAGGCCGCCACGGCGGCGGAGCCCAGCGAGCTGATGCAGCTGGAGATGCCCGAGGACATCCGGGTCGGCTCGCCGAATGACGGCTCCAACAACTTGGACTCCGACTTTCACTTGCTGGCGGTGAGTCAGGGAGGGAACACGGCGGCGCAGGCCGAGTCGACTCGTAGGTGGGGCACGAGTCAAGACGCGCTGCAAGTTCAACTACCGGCTTCAGCTCTTGTTCCATTAGAAGAGTTGAGCCAAGAGGACACTCACTACTCCCAAACGGTATCGAACATTCTGCAGAGCCAGTCGAGCCGGTGGCCCCGGTCACCCCCCTCCGTTGGCTACAACACATTCTCCACGCATTCAGCTTTCGCCAAGTGGACCACCCGCGCCACCCACCACTTCCACCCCGCCGTCGACGGCACCAACCAGTGGCTCCTCAAGTACATTCTCTTCACTGTCCCATACCTCCACGCCAAGAgccccgccgactcctccccccaaggcgccgccgccgccgACCCCAAGCTCCGCGGCAAGGGAACGCCGCAGGACGAGCTCAGCGCCAACCACGCCTCCATATTGGGCGACACCATCGAGTACGTGAAGCAGTTGCGCCGGAAGATCCAGGAGCTCGAGGCGCGTAACCGCCAAACGGAGGCCGAACGTTCCAAGCTCCCAGAGGTAACGGTTCAGAGGACGAGTAGCAGTTCGAGCAAGGAGCAACAGAAGAGTGGGGTGACGGTGATGGATAAGCGGAAGGTGAGGATCGTGGAAGGGGCGGCAGCGAAGGCGAAGGCGGTGGATGTTGCGGCGGCAACCACGTCGGTGCAAGTTTCGATCATCGAGAGCGACGCGCTGTTGGAGCTCGAGTGTCCCCACAGGGAAGGGTTGCTTCTTGACGTGATGCAAATGCTGAGGGAGGTGCGGATAGAAGTTACAGGGGTGCAGTCGTCGCTTAACAATGGCGTGTTTGTGGCGGAGTTGCGGGCTAAGGTCAAGGAAAATGCCAACGGCAAGAAGGTCAGCATCGTTGAAGTGAAGAGGGCACTTAACCAAATCATACCCCACATTGTTGACTAG 1911 0.5421 MAAPLGNRLQSMLQAAVQSVHWTYSLFWQLCPQQVILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFTFPPGVGLPGKAYARRQHVWLTGANEADSKTFSRAILAKFVIFIMQTVVCIPLLDGVVELGTTDKVQEDLSFVQHVKSFFIDHNSPLPPKPALSEHSTSNPTSSSDHIPAVMYTVADPPAANPALDDMDEEEEEEDEDDEEEEEEEAESGSDEETGRRMAGGTPVPDMEAATAAEPSELMQLEMPEDIRVGSPNDGSNNLDSDFHLLAVSQGGNTAAQAESTRRWGTSQDALQVQLPASALVPLEELSQEDTHYSQTVSNILQSQSSRWPRSPPSVGYNTFSTHSAFAKWTTRATHHFHPAVDGTNQWLLKYILFTVPYLHAKSPADSSPQGAAAADPKLRGKGTPQDELSANHASILGDTIEYVKQLRRKIQELEARNRQTEAERSKLPEVTVQRTSSSSSKEQQKSGVTVMDKRKVRIVEGAAAKAKAVDVAAATTSVQVSIIESDALLELECPHREGLLLDVMQMLREVRIEVTGVQSSLNNGVFVAELRAKVKENANGKKVSIVEVKRALNQIIPHIVD 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01142 636 MobiDBLite consensus disorder prediction 504 521 - -
Cca02g01142 636 MobiDBLite consensus disorder prediction 204 222 - -
Cca02g01142 636 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 193 IPR025610 -
Cca02g01142 636 Gene3D - 438 520 IPR036638 GO:0046983
Cca02g01142 636 PANTHER TRANSCRIPTION FACTOR TT8 8 468 - -
Cca02g01142 636 PANTHER TRANSCRIPTION FACTOR TT8 468 633 - -
Cca02g01142 636 Coils Coil 471 498 - -
Cca02g01142 636 Coils Coil 238 263 - -
Cca02g01142 636 MobiDBLite consensus disorder prediction 237 263 - -
Cca02g01142 636 MobiDBLite consensus disorder prediction 491 524 - -
Cca02g01142 636 MobiDBLite consensus disorder prediction 437 465 - -
Cca02g01142 636 MobiDBLite consensus disorder prediction 200 281 - -
Cca02g01142 636 PANTHER TRANSCRIPTION FACTOR TT8 8 468 - -
Cca02g01142 636 PANTHER TRANSCRIPTION FACTOR TT8 468 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01142 Cca-Chr2 28840636 28849511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01142 302 633 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 31.250 7.33e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01142 - - gmx:100786815 939.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01142 02 28840636 28849511 Cca02g01142 02 28840636 28849511 ECH
Cca03g02532 03 46579572 46589571 Cca02g01142 02 28840636 28849511 PCT