Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01129 ATGAGAGAGGGGCTGAGATCTCGGACTCGAGTGGGGACGGTTTCTGGTGGTGGAAGAGTTGCTCACAATGAAACGATTGCTGTCAAGAATGAGACTGTTGACTTGGGTGGTGAGGGTTCAGAGGCTCGGAACTCGTCGGCTGAGAAGAAGGGCGAAGTTGAACGGGGTGTAAAAGAAGAATGTGGCTTCGATTTGAATGTGAGTGCGAGTGGAAATGTTGACTTGGCTGAGAACGGGACCGGTAGTTGTTTTAGCGGTGGGGGTAGCGTTGTAGTAGCTGAGGTAGATAGGAAGGCAAAGAGTGAGCGAGGTTCAGGTGATGAGGTATTGGCTGGTGGTCGAGTGTTGCGCTCGAGGTCAAAGAGGGGGCATGACAGAAGATTGTACTATGGAGAGAATGATGATGTTTTTTCTGGGAATGACGAACATAGTGAGTGTGAGAGGGTGAAAGTTAAGAAGGAATTTGAAGAAGCTGATGAATCTTTAGCTGACAGTTGTGAGGATGAAGTGCTTAAGGTGAGGAAGGTTGGGAATGGCAAAAGGAAATTGAAACGGAAGCGTGGGAGGCCTCCCAAAGTAGAGTTGAAAGAGGAAGGTCAATCCATTGATCAGTTGCCACCTAAGCGTAAGCGTGGAAGACCTCCCATGGCTGGCCGACAGAAGTCACAAAACCATCTTGTGACTGTGGCGGCACATAATAGAAAAGGAAAGGGAGGCCTTCGAAAAGGTAAAGATCGATTAACTAAGAAAGATGGTGCTAATGCAGATCCAATGGATGATACAAATTCAATGGAGTCTGCTGGGGATGAGTTAGAAAAGAAGGAATTTTCTCCTGTCAAGAAGAATAAATTTAGTAAGGTTTTGGAAGCTGACAACAATGTGGTGGCCTCACCATTAAGATCAAATACAGTGAATGCAAATGCCAATGAGAAAAGTGGAAAGAATCAAGTAAAGCAGTTTGTGAGGGATCAAATTAAGGAACGGCTCTCAGCTGCAGGCTGGACAGTTGACTACAGACCTAGGAATGGTAGAGAGTACAAAGATGCAGTGTATGTTAGTCTGGATGGACATACACACTGGTCAATCACCTTGGCCTACAAAAGGCTTAAAGAGTATTATGAAGCTGGTACTGGTGAAGGTAAGGCATATGGGCCCGGCTTCAAATTTACACCAATACCAGAAGAGGATTTCCAAATACTAACCAAGGTAATTAACAAGCAAAGAAAATGGAAAGATAAATCGGTACATAAAGGGGGAAAGGGTAGAAAGGAAGTTGATGGAGTCAATGGTAAAAGGAATAAAGAAAAGTCTGGTTCTGGTGCAGGCTTGGGTAAGTCAATGAAGAGGAAAATGAAAAGGAAATGGTCACATGGAATCACTGATGTTGCATCACATAACAGGATGCCAGTTCTTGTGAGGGATCATAAGCGACACAAAACACAAAACAAGAAGCGAAGTGGTCTGTTGGTTCGCAATGCTGAGGAGATAGATTCAGACACTGAGGGATATGTACTGTACAGTGGAAAACGAACTTTGCTTGCCTGGATGATTGATTTGGGTACAGTCATTCAAAATGGGAAGGTTTGTTATATGCCAGACAAAAATAAAAGTGCAGTTCTGGATGGTAAGATCACAGAAGATGGTATTCATTGTAGCTGCTGTAATAAAATTGTACCTATTTCGGAATTTGAAGTACATGCAGGAAGTGAACTTGCTGATCCACTTAGAAATATATATGTGGAGGAAGGAACTTCCCTTTTACAATGCTTGCTAGATTCATGGAATAAACAAGATGAATTTGAACGTAAAGGTTTTCATTTTGTTGATGTTGCGGGTGAAGATCCAAATGATGATACATGTGGTGTCTGTGGAGACGGTGGAGACCTGATATGTTGTGATGGTTGCCCATCAACATTCCATCAAGGCTGCTTGGATATAAAAAAGTTTCCATCTGGTGATTGGCACTGCGTCTATTGCTGTTGCAAATTTTGTGGGTCTGCGGTTAATGGAAGTTCAAGCCAAAGGGATGACAATGATGAACTTGCTGTATCAAAATTACTCACATGCCAATTATGTGAGGAAAAATATCACAGATCCTGCATTGAGGCAAATGATGCCAGTACTGATGATTCCACGGATGTCTTCTTTTGTGGAAACAGATGTCAAGAGTTATCTGAGAGACTTGAAATGCTCCTAGGGGTTAAACATGAAATTGAAGATGGTTATTCTTGGACTTTTATTCAACGGTCAGATGTTGGTTTTGATGCTTCTCAAATAAAACCTCAGATGGTTGAATGTAATTCTAAACTAGCTGTTGCATTATCGATAATGGATGAGTGCTTCATGCCATATATTGATCACAGAAGTGGTACCAATCTAATCCACAGTATTCTGTATAATTGTGGGTCAAATTTCAATCGTCTGAACTATAGTGGATTTGTTACTGCAATTCTACAGAGAGGTGATGAGATCATCTGTGCTGCATCTATCAGGATCCACGGGAACCAACTAGCAGAGATGCCATTTATTGGGACCCGCTATATGTATAGGCGACAAGGAATGTGCCGCCGGCTTCTAAATGCCATTGAATGGGCACTCAGCTCTTTAAATGTTGAGTTTTTGGTCATACCAGCTATCTCAGAACTCAGAGAAACTTGGACTTCTGTTTTTGGGTTTGAGCCACTTGAATCAACAAACAAGGAAGTAATAAAAAATATGAATCTGTTGGTATTCCCTCACGTAGATATGTTACAGAAGAAGATACCAAAGCATAAATTGGCTGGCCAAAATCTGATTCCGACAGAAGTTTCCAATCTTACGAGGAATCAAATAGCAAATGCTTGTGATGGAACAGGCTCACATGGAACTGATTTGGTCAATTGTATGGATATCCCTCCCTGTAGTGCATGCAAGATAAATGATGAAACCAAATCTATTGAATGTGGTTGTCATCTTCCTGGGGGTTTATTGAATAAAGTACCTGACATTGCTAGCAATACTATAGATTGTCGGAAATCTTCAAAAGATGACACAACCAGTTGA 3042 0.4185 MREGLRSRTRVGTVSGGGRVAHNETIAVKNETVDLGGEGSEARNSSAEKKGEVERGVKEECGFDLNVSASGNVDLAENGTGSCFSGGGSVVVAEVDRKAKSERGSGDEVLAGGRVLRSRSKRGHDRRLYYGENDDVFSGNDEHSECERVKVKKEFEEADESLADSCEDEVLKVRKVGNGKRKLKRKRGRPPKVELKEEGQSIDQLPPKRKRGRPPMAGRQKSQNHLVTVAAHNRKGKGGLRKGKDRLTKKDGANADPMDDTNSMESAGDELEKKEFSPVKKNKFSKVLEADNNVVASPLRSNTVNANANEKSGKNQVKQFVRDQIKERLSAAGWTVDYRPRNGREYKDAVYVSLDGHTHWSITLAYKRLKEYYEAGTGEGKAYGPGFKFTPIPEEDFQILTKVINKQRKWKDKSVHKGGKGRKEVDGVNGKRNKEKSGSGAGLGKSMKRKMKRKWSHGITDVASHNRMPVLVRDHKRHKTQNKKRSGLLVRNAEEIDSDTEGYVLYSGKRTLLAWMIDLGTVIQNGKVCYMPDKNKSAVLDGKITEDGIHCSCCNKIVPISEFEVHAGSELADPLRNIYVEEGTSLLQCLLDSWNKQDEFERKGFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQGCLDIKKFPSGDWHCVYCCCKFCGSAVNGSSSQRDDNDELAVSKLLTCQLCEEKYHRSCIEANDASTDDSTDVFFCGNRCQELSERLEMLLGVKHEIEDGYSWTFIQRSDVGFDASQIKPQMVECNSKLAVALSIMDECFMPYIDHRSGTNLIHSILYNCGSNFNRLNYSGFVTAILQRGDEIICAASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIEWALSSLNVEFLVIPAISELRETWTSVFGFEPLESTNKEVIKNMNLLVFPHVDMLQKKIPKHKLAGQNLIPTEVSNLTRNQIANACDGTGSHGTDLVNCMDIPPCSACKINDETKSIECGCHLPGGLLNKVPDIASNTIDCRKSSKDDTTS 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01129 1013 MobiDBLite consensus disorder prediction 417 433 - -
Cca02g01129 1013 CDD PHD1_AIRE 620 659 - -
Cca02g01129 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 681 IPR013083 -
Cca02g01129 1013 MobiDBLite consensus disorder prediction 175 275 - -
Cca02g01129 1013 MobiDBLite consensus disorder prediction 410 447 - -
Cca02g01129 1013 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 43 948 - -
Cca02g01129 1013 ProSiteProfiles Zinc finger PHD-type profile. 617 662 IPR019787 -
Cca02g01129 1013 PANTHER PHD FINGER PROTEIN 12 43 948 IPR042163 GO:0003714|GO:0045892
Cca02g01129 1013 SUPERFAMILY FYVE/PHD zinc finger 612 664 IPR011011 -
Cca02g01129 1013 SMART PHD_3 661 722 IPR001965 -
Cca02g01129 1013 SMART PHD_3 619 660 IPR001965 -
Cca02g01129 1013 MobiDBLite consensus disorder prediction 1 53 - -
Cca02g01129 1013 MobiDBLite consensus disorder prediction 190 210 - -
Cca02g01129 1013 Pfam Tify domain binding domain 542 591 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01129 Cca-Chr2 28578483 28586223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01129 182 927 PHD Transcription Factor Family AT5G36670 41.117 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01129 - - gmx:100784172 1401.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01129 02 28578483 28586223 Cca02g01129 02 28578483 28586223 ECH
Cca03g02131 03 41850813 41857701 Cca02g01129 02 28578483 28586223 PCT