Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01110 ATGGAGATGGAGGAAGCAGAGATGATAGATCTATACGAGGTTGACTATGAAGACTTATGTTCACCTTCAAGTTCAACCAAAGTGGATTCCATAATGGAAGCCCTAGGGCCCAGTGGGCCAGGCCTCCTCGCCGTCACCGGCGTCCCAAACGCATCCAACCTCCGTTCACACCTTCTCCCACTCGCTCGGAGCCTCGCTCTTCTCGACCGCGAAACCCGCAAACTGGTTCTCAAGGAGCATAACTTGGGCAGTGACGTTCCTCTGAGAGACCCTCATAGGACTGCTGCCAATCATCAAAGAGGAGCAACCAAGGAAGTCAAAAACAAATATCCTTCAACAGATTCTACCGTGGAAAAGGAGTTGAGTGTGGACAAGTTAGAGATCTCAAGAAGATTGACACTACCGCGCGAAGAAGGGAACCAGAGCAAGATTTTAGAAAGACTTGATTCTGATGCACAGAAGTTGACCAACCTTCAAATCACCACACAAGATTTGATGAAGAAGATAGAAATTAATGAGAAGAACGCAAAGGGAAAAGGTGACTATCAAGCAGCCATTCATCTTTGGAAGATTGACAAATTTGATTTTGTCGTGTGCATGAGTGCATACATTGGTGTGGTCTGTGGCAGCGTTGAAATTGGCTTAGTCATAGCTGTTGCAATATCAGTACTTCGGATACTTCTATTTGTTGCAAGGCCAAGGACATTTGTTTTGGGACACATTCCAAATTCTGTGATATACAGAAATGTTGAGCAATATCCAAATGCAAAACACGTTCCTGGAATCCTAATTCTAGAGATTGATGCACCAATTTACTTTGCCAATGCAAGCTATTTAAGAGAAAGGATCACAAGGTGGATTGATGAAGAGGAAGACAGAATCAAAGCTACAGGGGAGACAAGTTTGCAGTATGTTATTATGGATATGAGTGCTGTTGGGAACATAGATACAAGCGGAATAAGTATGCTTGAAGAGGTCAAGAAGATTACTGACAGAAGAGAGCTACAATTTATTTTGGTCAATCCTGGAAGTGAGGTGATGAAGAAATTGAACAAATCGAAGTTCCAAAATCATTTAGGTCAGAAATGGATCTATCTAACTGTTGAAGAGGCCGTTGGAGCATGCCACTTCATGCTCAGTGAATCCAAAATGAACCCCAAGAAAGATGGATCAGAGGGTTGGAACAATGTGTGA 1194 0.4322 MEMEEAEMIDLYEVDYEDLCSPSSSTKVDSIMEALGPSGPGLLAVTGVPNASNLRSHLLPLARSLALLDRETRKLVLKEHNLGSDVPLRDPHRTAANHQRGATKEVKNKYPSTDSTVEKELSVDKLEISRRLTLPREEGNQSKILERLDSDAQKLTNLQITTQDLMKKIEINEKNAKGKGDYQAAIHLWKIDKFDFVVCMSAYIGVVCGSVEIGLVIAVAISVLRILLFVARPRTFVLGHIPNSVIYRNVEQYPNAKHVPGILILEIDAPIYFANASYLRERITRWIDEEEDRIKATGETSLQYVIMDMSAVGNIDTSGISMLEEVKKITDRRELQFILVNPGSEVMKKLNKSKFQNHLGQKWIYLTVEEAVGACHFMLSESKMNPKKDGSEGWNNV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01110 397 CDD STAS_SulP_like_sulfate_transporter 253 368 - -
Cca02g01110 397 Pfam STAS domain 253 371 IPR002645 -
Cca02g01110 397 Gene3D STAS domain 232 377 IPR036513 -
Cca02g01110 397 PANTHER SULFATE TRANSPORTER 178 395 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cca02g01110 397 ProSiteProfiles STAS domain profile. 252 375 IPR002645 -
Cca02g01110 397 SUPERFAMILY SpoIIaa-like 254 375 IPR036513 -
Cca02g01110 397 PANTHER SLC26A/SULP TRANSPORTER-RELATED 178 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01110 Cca-Chr2 28387723 28390284 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01110 178 397 Inorganic Solute Cotransporters AT4G02700 61.818 4.74e-93 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01110 K17471 - gmx:100810196 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01110 02 28387723 28390284 Cca02g01110 02 28387723 28390284 ECH