Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01109 ATGGAGCAGTATGAGATTCTAGAACAGATTGGAAGAGGCTCCTTCGCTTCTGCTTTGCTAGTCAGACACAAACACGAAAACAAGAAGTATGTCCTTAAGAAGATTCGGCTTGCTCGCCAGACTGATAGAATCCGTAGATCTGCTCACCAGGAGATGGAGCTAATCTCTAAAGTTCGAAATCCATTTATCGTGGAGTATAAAGATTCCTGGGTTGAAAAGGGTTGTTTTGTATGTATCGTCATTGGCTATTGTGAAGGAGGAGATATGACGGAAGCTATTAAAAAGGCCAATGGCGTTCTTTTTCCTGAAGAGAGGCTCTGTAAGTGGCTGGTTCAACTGCTGATGGCACTTGATTACTTGCATGCAAATCACATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATGTGATGATCTTGCTTCCTCGGTTGTGGGAACTCCGAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTGTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTCTTGATATGCAAGCTTTGATCAACAAAATAAACAAATCTTTAGTGGCTCCACTACCAACAGTGTATTCTGGTTCTTTTCGAGGGCTTGTTAAGAGTATGCTGCGGAAAAATCCAGAGCTTAGGCCAAGTGCTGCAGAGTTACTAAATCATCCGCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATAACCCCAGAAGAAGTACTTATCCATTCCGATGGTCTGACTCAAACTACATAAGGAGGACTCAGTTTGTAGAGCCAGAATCTGTTTCTACTCTTTCTGACAGAGATAAACGATTGTCATTCAGCAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAACTGGGTTCTCTGTGTTCTACTCAAAGAGCACTGGGGTTCTCTACTTGTTCAAAAGAGAAGTACTATGAACTATCTGTTGGCTGTGTCCCTGATAGGGTGCCGAGATTGAGAGCAGGTAAGGAATATGCCACCCCCCAACGGCAGACAATATCATCAAAGATATCCCACACTGGTTTCAAGCGTGAGTTACTTCCAGCATCGTCCACTCCAGGTGGTAAACTTACCCCATCAACTCGCAGAGCTTCCCTTCCGCTGCCTACCAGAGCCATGGGCACGATCACCCCTTATAGAGCTAATGTTGGTCTTCTTCGAGGTGTGGACTCTCCTGACATTTCTGTTAATGCACCACGAATTGACAAGATTGCTGAATTCCCCCTGACCTCTTGCGAGGATTCTCTCTTCCCTGTCCGTGGAACTTCATCAACCTCGGCTCAGTGCTCTTCTGGTTCCCCAAAGAGCGCTGATCGCTCAATTATGAAGGACAAGTGTACAATCGAAGTTGTGGACAAAACCAGTGTCCCTTCTGGTGGCAGTGAAGCCTGTCCTACTGCTCCAGTTTCACATATCAAGGAATTCTCCGAACATGCTGTTTCAAGCCACTCCTCGGCCGAGTCCCACCAGCGCAGGTTTGATACCTCATCTTACCAGCAACGTGCGGAGGCATTGGAGGGTTTGCTTGAGTTCTCTGCACGGCTCCTACAGCAACAGAGATTTGATGAACTTGGGGTGTTGCTGAAGCCATTCGGTCCCGAGAAGGTTTCCCCGAGGGAAACAGCTATTTGGTTGGCTAAGAGCTTCAAGGAAACTGCGGTCTAA 1788 0.453 MEQYEILEQIGRGSFASALLVRHKHENKKYVLKKIRLARQTDRIRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMTEAIKKANGVLFPEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTVYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHLKLNNPRRSTYPFRWSDSNYIRRTQFVEPESVSTLSDRDKRLSFSNDRALNPSISGTELGSLCSTQRALGFSTCSKEKYYELSVGCVPDRVPRLRAGKEYATPQRQTISSKISHTGFKRELLPASSTPGGKLTPSTRRASLPLPTRAMGTITPYRANVGLLRGVDSPDISVNAPRIDKIAEFPLTSCEDSLFPVRGTSSTSAQCSSGSPKSADRSIMKDKCTIEVVDKTSVPSGGSEACPTAPVSHIKEFSEHAVSSHSSAESHQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFDELGVLLKPFGPEKVSPRETAIWLAKSFKETAV 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01109 595 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Cca02g01109 595 CDD STKc_Nek 3 258 - -
Cca02g01109 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Cca02g01109 595 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01109 595 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01109 595 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01109 595 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Cca02g01109 595 SUPERFAMILY Protein kinase-like (PK-like) 1 315 IPR011009 -
Cca02g01109 595 MobiDBLite consensus disorder prediction 387 406 - -
Cca02g01109 595 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 584 - -
Cca02g01109 595 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Cca02g01109 595 PANTHER SERINE/THREONINE-KINASE NEK4 1 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01109 Cca-Chr2 28381540 28387386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01109 10 289 MAP Kinase Kinase Kinase AT1G53570 29.333 2.02e-36 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Cca02g01109 Pkinase 6.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01109 K08857 - gmx:100810347 1059.67