Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01101 ATGAATCACACGAATCCAGTGAAAGAAGAGTACTTGGAATCATCGTATCAATTGGCTAGTGAATATCcaccaaagccaatggagggacttcatgacacgggacccccaccatttctcaccaaaacttttgatgttgtggatgatccagcaaccaaccacgtagtttcttggagcagagacggcacaagctttgtggtttgggatccacacaccttctctacatgtctccttcctagatacttcaagcacaacaatttctcaagctttgtcaggcaactaaacacttatGGTTTTCGAAAGATTGATCCAGATAGATGGGAGTTTGCAACTGACGGGTTCATGAGAGGGCACAGGCACCTGTTGAAGGGCATAAAGAGAAGGAAGGCACCTGCACAACTAACACGAGGTCACCACAATGTTGAAGTTGGATGCTTTGAATTGGACAAAGAGATTGATCGTTTGAGGCATGACAAGCTGGTGTTGATGATGGAGGTTGTGAATCTAAGACAGCAGCAACAGAAAGCCAAACTGTGCATTGAGGAGATGGAGCGAAGGTTACAAGGGACAGAAATCAGGCAGCAACAGATGATGGCATTCTTAGCTAGAGCTATTAAAAATCCTGCCTTCATACACCAACTCCAACAGAAAGAGAAGAAAATGGAGCTTCAAGAAGCCTTGACCAAAAAGAGAAGGGCAATTGAGCAAGGAGCTAGAGGTGTTGGAGAATCAAGCAGTGTTAAAGTTGAGGCCttggaatttggggatagtgaatttggaatttcagagttggaaATGTTAGCCAGGGAAATGCAGGGTTTTGGAAAAGGGATGATAGACAGGGAAGTAGGACCTGAGGTTCTAGAATCACAAGAGAGGCTGGATAGAGTAATTGATGAAGAGTTTTGGGAAGAACTATTGTGTAGTGAAAAATTTGAGCGTGGATTAGACATGCCAACTGCTGAAGATAAAGATGAAGATGCTGTCAAGGTGTTGGCCAATCAACTTGGTTGCTTTGATTCAAGTCATTAA 1029 0.3217 MNHTNPVKEEYLESSYQLASEYPPKPMEGLHDTGPPPFLTKTFDVVDDPATNHVVSWSRDGTSFVVWDPHTFSTCLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFATDGFMRGHRHLLKGIKRRKAPAQLTRGHHNVEVGCFELDKEIDRLRHDKLVLMMEVVNLRQQQQKAKLCIEEMERRLQGTEIRQQQMMAFLARAIKNPAFIHQLQQKEKKMELQEALTKKRRAIEQGARGVGESSSVKVEALEFGDSEFGISELEMLAREMQGFGKGMIDREVGPEVLESQERLDRVIDEEFWEELLCSEKFERGLDMPTAEDKDEDAVKVLANQLGCFDSSH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01101 342 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 330 IPR027725 -
Cca02g01101 342 Gene3D - 30 128 IPR036388 -
Cca02g01101 342 ProSitePatterns HSF-type DNA-binding domain signature. 77 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca02g01101 342 Pfam HSF-type DNA-binding 38 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca02g01101 342 PRINTS Heat shock factor (HSF) domain signature 38 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca02g01101 342 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca02g01101 342 PRINTS Heat shock factor (HSF) domain signature 89 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca02g01101 342 Coils Coil 215 235 - -
Cca02g01101 342 Coils Coil 165 185 - -
Cca02g01101 342 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 16 330 - -
Cca02g01101 342 SUPERFAMILY "Winged helix" DNA-binding domain 34 127 IPR036390 -
Cca02g01101 342 SMART hsfneu3 34 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01101 Cca-Chr2 28198879 28201433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01101 24 341 HSF AT3G22830 47.238 2.15e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca02g01101 HSF_DNA-bind 1.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01101 K09419 - gmx:100811945 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02153 03 42089669 42093617 Cca02g01101 02 28198879 28201433 PCT