Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01100 ATGTTCCCTGCAGTTATGTCCAATTCCAATTCCTTGTCCGAAGAGGCCACTGTCTCCTGTGGTACAAGAATCGCTGGACTAAATCATGTAGTTACAACCCTTTCTCCACAACAGCCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCAGGGAATCCAGACCCGGATGCTGAAGTGATTGCTTTGTCACCGAAGACTCTTCTAGCTACGAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGATCAGAACCTTCAGCTTCATAGGAGAGGGCATAACCTGCCATGGAAGCTGAAGCAAAGAAACAACAAAGAGGTGAAAAAGAAAGCATACGTTTGTCCAGAGCCTTCATGCGTTCACCACAATCCCTCAAGGGCTCTGGGGGACCTCACAGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGATCTATGCGGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTCTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCTTTCTGTGATGCATTGGCTGAAGAAAGTGCAAGACTGTCAGCAAACCAGTTAGCCACCAACAACACCACCACAAACCCATTAGTCCACTCCCTCTTCCTTTTCCCAACCcaacaacaacaccaccaccacaacaacaacaacagcaacttcatcaacaCCTGGGACCCTTCTCAACAAAACCCTAACCCTAGCAACCTCACCACCCTCCACACCAACATCAAACCTGAAGAATCTCCAAACTTCCACAACCTCTCTTCTCCCCCGTTCCTCCACCACCACCCCAAGACCATCATAACCTCACCCTTCCGTGACCTCTCACAGCCCACGTCACCGCACCTCTCCGCCACTGCACTGCTCCAGAAAGCCGCAACCGTTGGCGCCGCCACCCTCACAGGCCCCACTCATCACGTGACTCAACTCGGCATGGCCGAGTTAGTTGACTCGGTAGCTCCCGAACGCTACATCAACATGAGAAGCATCAAGAACAATGACGGTCTCACCAGGGACTTTCTCGGGCTCACCAACGGCAGCGCGGTTGACGTTAGCATCGACGTCAAGGATATGCTAACGTTCACGGGAGGGAGCGTAGAGTATAACCATCACCACCAACGCTACGAGCACCGTCATAATAATAACTCGCTTTTCAAGCCACAACAAGGTTTTGGATTCCTTGGCACAACAACTGGCCCCGAATCCTGGGGAAATTGTGAGTAA 1296 0.4769 MFPAVMSNSNSLSEEATVSCGTRIAGLNHVVTTLSPQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATNNTTTNPLVHSLFLFPTQQQHHHHNNNNSNFINTWDPSQQNPNPSNLTTLHTNIKPEESPNFHNLSSPPFLHHHPKTIITSPFRDLSQPTSPHLSATALLQKAATVGAATLTGPTHHVTQLGMAELVDSVAPERYINMRSIKNNDGLTRDFLGLTNGSAVDVSIDVKDMLTFTGGSVEYNHHHQRYEHRHNNNSLFKPQQGFGFLGTTTGPESWGNCE 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01100 431 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 406 - -
Cca02g01100 431 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Cca02g01100 431 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Cca02g01100 431 SMART c2h2final6 148 168 IPR013087 -
Cca02g01100 431 SMART c2h2final6 72 94 IPR013087 -
Cca02g01100 431 SMART c2h2final6 113 143 IPR013087 -
Cca02g01100 431 MobiDBLite consensus disorder prediction 35 55 - -
Cca02g01100 431 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Cca02g01100 431 MobiDBLite consensus disorder prediction 233 274 - -
Cca02g01100 431 Gene3D Classic Zinc Finger 51 120 - -
Cca02g01100 431 Gene3D Classic Zinc Finger 141 206 - -
Cca02g01100 431 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01100 Cca-Chr2 28183583 28187414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01100 17 419 IDZ Gene Family AT4G02670 50.472 1.04e-122 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g01100 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01100 K25870 - gmx:100812496 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01100 02 28183583 28187414 Cca03g02154 03 42103676 42107965 PCT