Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01094 ATGCAAGAAGCAAATGGGCCTTCCCGTCCTCTACTATACTGCTCTTGGTTGATCCTCGGGGACAGATTTGAACGGTGTAAATTTTTTGTAAGGAAGCAAATTTATGATAAGCCTTCTCCAAGTAAAAGTGCAGTACTGGATGCTTCGCAATCCTTTGCTCTGTCCCCTACCAGGGACAAAAATGAACTGAAATTGGACTTCAAGAGATTCTGGGAAACATTCAACATGCTTCAGATGTGTCGGTGCTTCATAGATCACAGAAACCTGTATTCTCTTGCCAATACTGATGATGGAGATGGAGGAGACCTGATATGTTGTGATGGATGCTCATCAACATTCCATCAAGGCTGCTTGGATATTAGAGTCCCTGTGGCTGTGGCAAATGATGCATTGCCAATACTGATATTCCAGGGATGTCTTCTTTTGTGGAAACAGATGTCAAGAGCTTTCAATGCGGAATCAAATAGCAAATAA 474 0.4241 MQEANGPSRPLLYCSWLILGDRFERCKFFVRKQIYDKPSPSKSAVLDASQSFALSPTRDKNELKLDFKRFWETFNMLQMCRCFIDHRNLYSLANTDDGDGGDLICCDGCSSTFHQGCLDIRVPVAVANDALPILIFQGCLLLWKQMSRAFNAESNSK 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01094 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 131 IPR013083 -
Cca02g01094 157 SUPERFAMILY FYVE/PHD zinc finger 97 124 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01094 Cca-Chr2 28100192 28102078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01094 98 122 PHD Transcription Factor Family AT4G14920 84.000 2.23e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01094 - K22262 cpep:111807565 50.8322