Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01091 ATGCAAATTGTACTTTCGCGTGAAAACCATTTGGTTATTCTAAGTTGTAACAGTGAAGAGTATCAGAATTCAGAAATGAATCACTTACCGTCAAACCTGTTACCCGATGAAACGAGCCCAGAGTGGGTTAACAAAGGAGACAACACGTGGCAACTAACGGCAGCTACTCTGGTGGGCCTGCAAAGTGTTCCGGGCCTGGTCATCCTCTACGGCAGCATAGTGAAGAAGAAATGGGCCTTGAACTCTGCATTCATGGCCCTATACGCTTTTGCGGCGGTTCTCGTTTGTTGGGTGGGTTGGTGCTACCAGATGTCGTTCGGCCAGGGGATGTTTCCGTTTTTGGGATGGCCAAACGTGGCCTTGGACCGGGAATTCCTTCTGCGTCCGGCTTTTGCAGGGAACTTTCCAAACGCCACTATGGTCTACTTCCAGTTTGTGTTTGCTGCCATCACTTTGATTCTCCTCGCGGGAGCGTTGCTTGGGAGAATGAACTTTCACGCCTGGATGCTGTTTGTTCCACTCTGGCTCACTTTCTCTTACACCATCTGTGCCTTCAGTATATGGAGCCCTCATGGCTGGTTGTTCAAGATGGGCCTCGTTGATTACTCCGGTGGCTTTGTTATTCACCTTTCTTCTGGGGTTGCTGGTTTCATCGCAGCATGTTGTGTAGGACCAAGGGCAATAAAGGATAGGGAGAGGTTCCTTCCAAACAACATACTTCTAATGCTGGCTGGGGCTGGGCTAGTATGGATGGGATGGAGTGGATTCAACGGTGGAGATCCATACACAGCCAGCATAGATGCATCTCTGGCCGTCCTTAACACCCACGTGTGCACGGCCATGAGCTTGTTGACTTGGCTTTTCCTTGACATCCTCTTGTTTGGAAAACCTTCTGTCATTGGTGCCACTCAAGGCATGATCACTGGTTTGGTTTGCATCACCCCTGCTGCCGGTGTGGTTCAAGGTTGGGCAGCAATGATAATGGGAATGATGTCTGGAAGCATCCCATGGTACACAATGATGGTCCTGCACAAAGAAATTAGGATCCTGAAACAGGTGGATGATACCATGGCAGTTTTCCACACTCATGCTGTGGCTGGTTCCTTAGGTGGCATTCTAGCTGGCTTCTTTGCTGACCCTAACCTTTGTCGTCTCTTCTACGGGGAACAAGATTCACAACACTACATAGGCCTTGCTTATGGCATATTCACGGGTAGGTCCAAGGAAGGGTTAAGGCAAATGGGGGTTCAGCTTCTTGGCATTGCGTTTGTGATACTCCTGAATGTCACCACAACTTTCATCGTGTGTGGGTTGGTTAAGGTGATAGTTCCACTGAGGCTGCATGAAGATGAGTTGAAAGTTGGGGATGAGGCGGTTCACGGGGAGGTTGCCTATGCATTGTGGGGCGATGGAGAGAAGCTTGAGACTGCCAATGAGGCTTTGAGTTTTCAAAAGAATCACGAGTGGCCAACTGTGGAACTAAAATCTTTCAGTGATGTTCAATTGGAGTAG 1512 0.4901 MQIVLSRENHLVILSCNSEEYQNSEMNHLPSNLLPDETSPEWVNKGDNTWQLTAATLVGLQSVPGLVILYGSIVKKKWALNSAFMALYAFAAVLVCWVGWCYQMSFGQGMFPFLGWPNVALDREFLLRPAFAGNFPNATMVYFQFVFAAITLILLAGALLGRMNFHAWMLFVPLWLTFSYTICAFSIWSPHGWLFKMGLVDYSGGFVIHLSSGVAGFIAACCVGPRAIKDRERFLPNNILLMLAGAGLVWMGWSGFNGGDPYTASIDASLAVLNTHVCTAMSLLTWLFLDILLFGKPSVIGATQGMITGLVCITPAAGVVQGWAAMIMGMMSGSIPWYTMMVLHKEIRILKQVDDTMAVFHTHAVAGSLGGILAGFFADPNLCRLFYGEQDSQHYIGLAYGIFTGRSKEGLRQMGVQLLGIAFVILLNVTTTFIVCGLVKVIVPLRLHEDELKVGDEAVHGEVAYALWGDGEKLETANEALSFQKNHEWPTVELKSFSDVQLE 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01091 503 Pfam Ammonium Transporter Family 50 465 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cca02g01091 503 PANTHER AMMONIUM TRANSPORTER 4 MEMBER 1-RELATED 29 491 - -
Cca02g01091 503 Gene3D Ammonium transporter AmtB like domains 22 468 IPR029020 -
Cca02g01091 503 PRINTS Rhesus blood group protein signature 144 160 IPR002229 GO:0005887
Cca02g01091 503 PRINTS Rhesus blood group protein signature 240 258 IPR002229 GO:0005887
Cca02g01091 503 PRINTS Rhesus blood group protein signature 271 293 IPR002229 GO:0005887
Cca02g01091 503 PRINTS Rhesus blood group protein signature 326 344 IPR002229 GO:0005887
Cca02g01091 503 PANTHER AMMONIUM TRANSPORTER MEP2 29 491 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cca02g01091 503 SUPERFAMILY Ammonium transporter 42 447 - -
Cca02g01091 503 TIGRFAM amt: ammonium transporter 47 465 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01091 Cca-Chr2 28023792 28025909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01091 138 488 Inorganic Solute Cotransporters AT2G38290 57.835 8.98e-136 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01091 K03320 - gmx:112999382 820.076