Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01083 ATGGCCAATCACCCTTCCGACCCTCCCACCGACGACTTCCTCGAGCAAATCCTCGGCCTCCCCACCTTCGCTCCCGCCGACCCCGCCGATGCCTCTCCGATGATGCTTCAGCTCAACTCCGCCGACGCCGCCACCCACCTCCCCGCCGGACCCCCCTTCCACGCGCCGCCCTACCACTTGGGCCTCAGCTTGGACCAAGGTAAGGGACCCTTCCTTAAGCCCGAGGATGCTTCTGGAAGCGGCAAGCGCTTCCGCGACGATCTCCTTGATACCAGGCCCAAGAATAATGTTTTTCATGGGCAACCCATGCCCACTACTGTTCCTAATGCTCCACATCCACCTGCAGTGCGACCTAGAGTACGGGCTAGAAGAGGACAGGCTACAGATCCACACAGTATAGCTGAAAGGTTGCGCAGAGAGAGAATAGCAGAAAGAATCAGGGCTTTGCAGGAACTCGTTCCAAGTGTCAACAAGACAGATAGAGCTACCATGCTGGACGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCTGTGGCACCACTTGTAACTGACATCCCATTATCATCAGTCGAGGAAGAAGGCAATGAGGGAAGAAACCAGCCAGCTTGGGAGAAGTGGTCAAATGATGGAACAGAAAAACAAGTAGCTAAGCTTATGGAAGAAAATGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAAGCACTCTGCATCATGCCCATCTCACTGGCATCAGCAATATACCAGTCTCAACCATCAGACACCTCTAGTATAGTTAAGCCTGAAACTAATCCCCCTTAA 843 0.5255 MANHPSDPPTDDFLEQILGLPTFAPADPADASPMMLQLNSADAATHLPAGPPFHAPPYHLGLSLDQGKGPFLKPEDASGSGKRFRDDLLDTRPKNNVFHGQPMPTTVPNAPHPPAVRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRATMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGNEGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDTSSIVKPETNPP 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01083 280 Pfam Helix-loop-helix DNA-binding domain 131 175 IPR011598 GO:0046983
Cca02g01083 280 MobiDBLite consensus disorder prediction 78 93 - -
Cca02g01083 280 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 270 - -
Cca02g01083 280 MobiDBLite consensus disorder prediction 73 130 - -
Cca02g01083 280 SMART finulus 132 181 IPR011598 GO:0046983
Cca02g01083 280 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 270 - -
Cca02g01083 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Cca02g01083 280 Gene3D - 121 183 IPR036638 GO:0046983
Cca02g01083 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 185 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01083 Cca-Chr2 27874175 27879134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01083 53 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 79.149 6.82e-116 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g01083 HLH 6.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01083 - - gmx:100793177 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01083 02 27874175 27879134 Cca02g01566 02 34355387 34361428 ECH
Cca02g01083 02 27874175 27879134 Cca02g01083 02 27874175 27879134 ECH