Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01075 ATGGATAATTCATTGAGAATTAGCCACGAAAAAGAGCTGAATCTCGAGGCCACGGAGTTGAGGCTAGGGTTACCCGGAAGCGATGAGCCTGAGAAGCGTTCTGTTGTCAGAAGCAACAAGAGATCTTCACCTGAAGCAAGTGAAGAACTAGAGTGCATGAGCAAGGGCAACATGAATTCTAATGGTTCTGATGTTACTAGTGATCATGACCAAGACAACGTTGTGCCACCTGCAAAGGCACAAGTAGTGGGGTGGCCACCGATTCGTTCTTATAGGAAGAATAATCTACAACAAAAGAAAGGAGAAGAAGGTGAAGGTTCTGGGATGTACGTGAAAGTTAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTACAAGAGCTACCCAGAACTTCTCAAGACCTTGGGAAATATGTTCAAGTGCACATTTGGTGAATATTCAGAAAGGGAAGGGTACAATGGATCTGAATATGCTCCAACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCCTGGAACATGTTTGTGTCATCCTGCAAGAGGCTGAGAATTATGAAAGGATCAGAAGCAAAGGGTTTGGGATGTTTATGA 615 0.4423 MDNSLRISHEKELNLEATELRLGLPGSDEPEKRSVVRSNKRSSPEASEELECMSKGNMNSNGSDVTSDHDQDNVVPPAKAQVVGWPPIRSYRKNNLQQKKGEEGEGSGMYVKVSMAGAPYLRKIDLKVYKSYPELLKTLGNMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKGSEAKGLGCL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01075 204 MobiDBLite consensus disorder prediction 25 48 - -
Cca02g01075 204 Gene3D - 102 204 - -
Cca02g01075 204 PANTHER AUXIN-INDUCED PROTEIN 6 202 - -
Cca02g01075 204 MobiDBLite consensus disorder prediction 18 72 - -
Cca02g01075 204 SUPERFAMILY CAD & PB1 domains 104 194 - -
Cca02g01075 204 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 202 IPR003311 GO:0005634|GO:0006355
Cca02g01075 204 MobiDBLite consensus disorder prediction 53 70 - -
Cca02g01075 204 ProSiteProfiles PB1 domain profile. 108 195 IPR000270 GO:0005515
Cca02g01075 204 Pfam AUX/IAA family 18 202 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01075 Cca-Chr2 27820438 27821899 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01075 111 201 B3 DNA Binding Superfamily AT2G46530 39.560 5.97e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca02g01075 AUX_IAA 2.3e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01075 K14484 - gmx:100799875 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01075 02 27820438 27821899 Cca02g01075 02 27820438 27821899 ECH