Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01073 ATGGAAGTTGGCCCCAAGAAGGAGAAGAACATGGTCTTTGAGGAAACTGAGCTCCGGCTAGGACTCCCTGGAAATGGAGCCTCAGCAACAACTGAACCAGAAGGAGTGAGGAAGAGAGGTTTCTCTGAAACTGAGACCCAAAAAACCACCGTTGATTTGATGCTTAACCTCTCTCCAAAGGAATCTGCTACTGCTGATGGAGCAGATCCACGTGAGACTTCGCCTAAGGAGAAGACCCTTTTGCTTCCCGATCCCGCCAAGCCTCCTGCTAAGGCGCAAGTGGTGGGATGGCCACCAGTGAGGTCTTTCAGGAAGAACATGTTTGCAGCCCAAAAGAGCAGTGGAGAGGAAAACGAGAAGAACAGCCCTAATGCAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCATACCTCCGCAAAGTGGACTTGAAGATGTACAAGAGTTACCCTGAGCTCTCTGATGCCTTAGGCAAAATGTTTAGCTCCTTCACCATCGGAAATTGTGAATCCCAAGGCTTCAAGGATTTCATGAATGAGAGCAAGTTGATGGATCTTTTGAACAGCTCCGACTATGTCCCGACCTATGAAGACAGGGATGGCGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGA 651 0.4885 MEVGPKKEKNMVFEETELRLGLPGNGASATTEPEGVRKRGFSETETQKTTVDLMLNLSPKESATADGADPRETSPKEKTLLLPDPAKPPAKAQVVGWPPVRSFRKNMFAAQKSSGEENEKNSPNASFVKVSMDGAPYLRKVDLKMYKSYPELSDALGKMFSSFTIGNCESQGFKDFMNESKLMDLLNSSDYVPTYEDRDGDWMLVGDVPWEMFVES 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01073 216 ProSiteProfiles PB1 domain profile. 125 216 IPR000270 GO:0005515
Cca02g01073 216 Gene3D - 117 216 - -
Cca02g01073 216 MobiDBLite consensus disorder prediction 19 94 - -
Cca02g01073 216 Pfam AUX/IAA family 15 216 IPR033389 -
Cca02g01073 216 PANTHER AUXIN-INDUCED PROTEIN AUX28 8 216 - -
Cca02g01073 216 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 216 IPR003311 GO:0005634|GO:0006355
Cca02g01073 216 SUPERFAMILY CAD & PB1 domains 121 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01073 Cca-Chr2 27730626 27734084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01073 113 215 B3 DNA Binding Superfamily AT3G61830 34.951 7.89e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Cca02g01073 AUX_IAA 1.4e-71 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01073 K14484 - gmx:100780214 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01073 02 27730626 27734084 Cca03g03044 03 51877842 51879903 ECH
Cca02g01073 02 27730626 27734084 Cca02g01073 02 27730626 27734084 ECH