Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01067 ATGACCATGAAGCGGTTGGTGAGAGTGAAGAGGGATGCGGTTGCAGCATGCATGACTTGCCCTCTTTGCAACAACTTTCTCAAAGAGGCCACTGCCATTTCTCTCTGCCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATTACAGATGAAGAATTGGAGAACTGTCCAGTTTGTAACATTGATTTGGGCATTGTTCCACTTGAGAAAATGAGGCCAGATAACAGCTTACAAGATTTAAGGAACAAAATTTTCCCTTTAAATAAAAGAAAGGACAAGGAACCTGTAGCTGTCCCCTCTGTACTGTTACCAGCTAGAAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAGCACTCCAAGGGTATCCACACAGTTAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTAGTGGCCTGCCAGGCTCTAGCTTCTCCATTGAAAAGGTAATTAAAAAAGAAGCGGAATTACTGGATGACCGCCAAGATAGTTCATGCTCACCTGACACTTCAAACAAGTCTGCTAAGAATGTTGGACAGAGTTTGTCACCTTCTAAAAATAGCCAATCCATAAGCAATAGAGGACCACAGAATGGTGCTGAACCACAAGAAGCAAAATGGGATCTTTGGAAAACTCTGAATTATTTAGCAGAGGCTGCTAGTAGGAGCAAGTCTTTTAAGTCTAATGCGCAAGCGTCTGATGCTAATCTAGAATCCATGAAAGTGACTGACAGTGATTCTAAAGTGCTGAAAGCAAAAATTAAGGAAAATAAGCGCAAGGCAAAAGTTGATGATGAAAAGATTAGCACTGATCATGTCTCTTCAGATACAGCAAAACCACACAAATTGCGGAGAGTACGCCCAAAAAAGGAACCTGTTTTTGGAGAATCAAGAATATCACCTCAGGCTGTTCTGGATGCTACTGGCAATAATCTCTTGTGGAACAATTCAATTTGGTTCTCCTTAGCAGCTTCCGAAAACCAGGAAGGGGATGCACCTTTACCCCAAATTCCTTCGAGTTATGTAAGAATAAAGGACGGAGGGATACCAGTCTCATTTATCCAAAAGTTATTAATGAAGAAACTAGGCCTGAAAAGTGAGGATGAGGTTGAGATTAAATGCATGGGACATCCAGTGCTTCCTTCACTACAGGTACAAAATTTGGTTGAACTGTGGCTTGATACGGCGTCTACAGGACACAGAATTCCTGCAACCATTGGATCCTCAGGGAAAGATTTTGTCATGATCCTAACCTATGGCCGGAAGGTCTCACAGCCTTGA 1290 0.4202 MTMKRLVRVKRDAVAACMTCPLCNNFLKEATAISLCLHTFCRKCIYDKITDEELENCPVCNIDLGIVPLEKMRPDNSLQDLRNKIFPLNKRKDKEPVAVPSVLLPARRKERSLSSLVVSTPRVSTQLTMTGRRTKPTRKASGLPGSSFSIEKVIKKEAELLDDRQDSSCSPDTSNKSAKNVGQSLSPSKNSQSISNRGPQNGAEPQEAKWDLWKTLNYLAEAASRSKSFKSNAQASDANLESMKVTDSDSKVLKAKIKENKRKAKVDDEKISTDHVSSDTAKPHKLRRVRPKKEPVFGESRISPQAVLDATGNNLLWNNSIWFSLAASENQEGDAPLPQIPSSYVRIKDGGIPVSFIQKLLMKKLGLKSEDEVEIKCMGHPVLPSLQVQNLVELWLDTASTGHRIPATIGSSGKDFVMILTYGRKVSQP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01067 429 SUPERFAMILY RING/U-box 16 86 - -
Cca02g01067 429 MobiDBLite consensus disorder prediction 167 202 - -
Cca02g01067 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 425 - -
Cca02g01067 429 MobiDBLite consensus disorder prediction 114 146 - -
Cca02g01067 429 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Cca02g01067 429 MobiDBLite consensus disorder prediction 114 144 - -
Cca02g01067 429 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Cca02g01067 429 SMART ring_2 20 60 IPR001841 -
Cca02g01067 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 102 IPR013083 -
Cca02g01067 429 MobiDBLite consensus disorder prediction 266 284 - -
Cca02g01067 429 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Cca02g01067 429 MobiDBLite consensus disorder prediction 161 206 - -
Cca02g01067 429 MobiDBLite consensus disorder prediction 266 298 - -
Cca02g01067 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 425 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01067 Cca-Chr2 27623956 27630118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01067 1 348 C3H Transcription Factor Family AT2G30580 49.003 5.32e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01067 K16277 - gmx:100778462 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01067 02 27623956 27630118 Cca02g01573 02 34412362 34421822 ECH
Cca02g01067 02 27623956 27630118 Cca02g01067 02 27623956 27630118 ECH
Cca03g02174 03 42354530 42360354 Cca02g01067 02 27623956 27630118 PCT