Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01062 ATGGCCACAGAAGAGCCCACTGTCGCTGTTGAACCCGCACCCGAGCCTGCCACCACCGAGCCTCCTCTGGAGGAGAAGGAGGAGCCCAAACCTGAAGCCAAGGCTAAGAAAACCAAGGAACCCAAACCTAAGAAGGTTTCCAGACCCCGCAATCCTCCCACTCATCCTTCCTACGAAGAGATGATCAAAGATGCAATCACCTCACTGAAGGAGAAAACCGGTTCCAGCCAATACGCGATTGCCAAGTTCATTGAGGAGAAGCACAAACAGCTTCCACCGAACTTCAAGAAGCTTCTTCTCTTCCACTTGAAGAAGCAAGTTGCTGCTGGGAAACTCGTCAAAGTCAAAGGCTCCTTCAAGCTTCCGCCGGCCAAGCCTTCTGCTTCTTCTCCTGCGAAGAAGAAGAAGCCTGCAGCTGccaagccaaagccaaagccaaagcccaagcccaagcccgctgctaagcccaagcctgccgctaagacagctaaagccaaagccccagccaaggccaagccagctgccaagcccaaagccaaggctcctgccaagccaaagcccgctgccaaggccaagccagctgcaaagcccaagcctgccgctgctaagcccaagaccaccgccaagcctgctgccaaacccaagcctgccgctgccaagcccaaagccgccgccaaacctgctgccaagcccaaggccaagcccGTTAAGGCTGCAAGGACGTCGACGAGGACTTCACCGGGGAAGAAAGCCCCAGCTGCCAAGCCCGCACCAAAGAAGGTAGCAGCGGCGAAGAAAGCTCCAGTGAAGAGTGTGAAACCCAAGAGTGTAAAGTCTCCGGCGAAAAAGGCATCGACTAAGAGAGGGGGTAGGAAGTGA 879 0.3595 MATEEPTVAVEPAPEPATTEPPLEEKEEPKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMIKDAITSLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLFHLKKQVAAGKLVKVKGSFKLPPAKPSASSPAKKKKPAAAKPKPKPKPKPKPAAKPKPAAKTAKAKAPAKAKPAAKPKAKAPAKPKPAAKAKPAAKPKPAAAKPKTTAKPAAKPKPAAAKPKAAAKPAAKPKAKPVKAARTSTRTSPGKKAPAAKPAPKKVAAAKKAPVKSVKPKSVKSPAKKASTKRGGRK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01062 292 PANTHER HISTONE H1.1 169 289 - -
Cca02g01062 292 PANTHER HISTONE H1.1 2 200 - -
Cca02g01062 292 SMART h15plus2 52 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca02g01062 292 PANTHER HISTONE H1 169 289 - -
Cca02g01062 292 PANTHER HISTONE H1 2 200 - -
Cca02g01062 292 Pfam linker histone H1 and H5 family 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca02g01062 292 Gene3D - 50 129 IPR036388 -
Cca02g01062 292 MobiDBLite consensus disorder prediction 114 292 - -
Cca02g01062 292 SUPERFAMILY "Winged helix" DNA-binding domain 51 135 IPR036390 -
Cca02g01062 292 MobiDBLite consensus disorder prediction 20 39 - -
Cca02g01062 292 PRINTS Histone H5 signature 41 62 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca02g01062 292 PRINTS Histone H5 signature 68 85 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca02g01062 292 PRINTS Histone H5 signature 145 159 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca02g01062 292 PRINTS Histone H5 signature 180 197 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca02g01062 292 PRINTS Histone H5 signature 202 221 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca02g01062 292 MobiDBLite consensus disorder prediction 171 185 - -
Cca02g01062 292 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 54 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca02g01062 292 MobiDBLite consensus disorder prediction 1 59 - -
Cca02g01062 292 CDD H15 52 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca02g01062 292 MobiDBLite consensus disorder prediction 276 292 - -
Cca02g01062 292 MobiDBLite consensus disorder prediction 136 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01062 Cca-Chr2 27515125 27517402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01062 59 151 Single Myb Histone (SMH) Gene Family AT1G49950 35.484 2.64e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01062 K11275 - gmx:100795994 152.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01062 02 27515125 27517402 Cca02g01062 02 27515125 27517402 ECH