Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01058 ACAGTAGAGTATGGATTGGGGTGTATCACTTGTTCATTCACTTGCACAAAAGGCAAAAAGAACAGTATATTGTTCTGGCATGTTTCACCTACCCAACCATCTCCTGATTCTTCAAATTATGCATCAAGCAGTGGCCTCTCTGGGGATGATAAGGAAATTGGGTATAGAACTGCAACATCAAAGCATTTATATCTTTTGGCCAACAACTCTGCTCTTCACATCTTACCCGTCAAAATTGACCTGAATTTTGCTCGCATGGTGATGGCAGAGGTGGTGGGTACTTTTATTTTGATGTTCTGTGTATGTGGAATCACTGCAAGCACACAATTCCAAAATGGTGCAGTGGGCCTTCTGGAGTATGCAGCTACAGCAGGATTAACAGTGGTGGTGATAATTTTCTGTATAGGGCCAATATCTTGTGCGCACGTTAACCCAGCTGTCACAATAGCCTTTGCAACAATTGGTCAATTTCCATGGTTCAAGGTTCCAGTTTACATAATAGCACAGACAGTAGGTTCTATGTCGGCAACATACATAGGTAGCCTTGTATACGGCATAAAATCAGATGCTATGATGACCATGCCACTCCAAGGGTGCAACTCTGCCTTCTGGGTGGAGGTTATTGCAACTTTCATCATCATGTTCCTCATTGCAGCTTTGACATCTGAATCTCAATCAGTGGGCCATTTATCTGGCTTTGTTGCTGGAATTGCAATTGGGCTTGGTGTACTAATCACAGGCCCTTTCTCAGGTGGATCAATGAATCCTGCAAGATCATTAGGTCCAGCAATTCTCTCATGGAAATTTAAGGACATATGGATATACATGCTAGCCCCGAGTGGTGGAGCTGTAGCAGGAGCTGCAACGTTTCGTTTCCTGCGCCTTCGTGACCAACATTCTAGTACTTTGTCCTCTCCAAACATCAATGATGTTGGTCGTCCCATACCCTTTTGCTCAAAGTATAATGGCAAACCCACCTTCACACAGATCATGGTGGCTTCCTCTATCGGGTTGATATTTGCCGCAGCAATGCATTATCGCATTAAAATAATGAAAGATCGAAAGATCATCCCACATCTCAGAATGTCAAAGGCAAGCAAAGCCCCAAAGCTTGAAAATTTCTCTCATTACGTAGCTAGGCAAATGGGCTTCAAAGACAGGAAAAGTTGTCCTCAACTATGTAAATTGGCTTCTGAATACATAAGGAAATCCGAGGGATGTGAAGATGATCTGTACGCCTTCTTCGAGAACGAACCAAATGCGGATTCACTTTTTGTGAAGCTTGTGGAGGAGTTTGAGAGATGCATTCTTAGTTACTTTGCATTCCATTGGAGTCATGGTGATGTTTTGATTAGTCAGGTGTTTGGCTCTGAAATTAAACCAAGATCGAAGTTCAAGCACATAGTTATGGCAGCAACTAGGGAACAAAGGTTCGAGAGAGTAACCAAGAATCTGAAGGTGGCTAGAGTTTTTAACACGTTGGTGGAAGAAATGAAAGCAATGGGCCTTGTAACAAATGATGACTCTCGATGCACAGAGGTGATGGCTCCAGTAGCTCATAGTGATAGGAGCCCTGTGCTTCTTTTCATGGGTGGTGGCATGGGAGCTGGCAAGAGCACAGTGCTTAAGGACATTCTCAAAGAACCTTTCTGGGCAGGAGCAGCAGGCAATGCTGTCATCATTGAGGCAGATGCCTTCAAAGAATCAGATGTCATCTATAAGGCCCTCAGTGCAAGAGGCCATCAGGACATGATTCGAACAGCTGAACTGGTACACCAATCATCCACAGATGCAGCCTCATCCCTTCTGGTAACAGCACTAAATGAGGGGCGTGATGTAATTATGGATGGCACACTCTCTTGGTTACCATTTGTTGTGCAGACAATAACAATGGCTAGAAATGTCCACCGCCGGCGTTACCGGATGGGAGCTGGCTACAAGATGAATGATGATGGAACTGTGACTGAAAACTATTGGCAACGAATTGAAGGGGAAGAACCTGAACATGTTGAAGGCAAAAGGAGAAAACCATATAGGATAGAGCTGGTTGGAGTTGTGTGTGATGCTTACCTTGCAGTCATTAGAGGCATAAGGAGAGCTATCATGTGTAGAAGAGCAGTAAGAGTGAAGTCACAATTGACATCTCACAAGAGATTTGCTGATGCATTTCTGACTTATTGTCAGCTAGTAGACAATGCCCGGCTATACAGTACAAATTCTTTGGAAGGCCCACCTAAGTTGATAGGATGGAAAGATAGAGACAAGACATTGCTTGTTGATCCAGATGAAATAGATTGTCTGAAGAGGGTTGCTAGGTTGAATGAAAGTGCCAACAACATATATGAACTTTACAAGCACCCCAATCCAACTTGTGAAGCTGGATCGATATGGAAAGATATTGTACTTTCTCCTTCAAGGTTGAACATCCAAAAGGAGCTGAAGTATTCAATCCAAAAGGTTGCTGCTCCTGGTAGGTTGCTTCATAGCCAACAACAGCGGCTGGAGCATGCTATGAAAATTGAATACTGTCAGTTTGAAGTTCCGGCCTTCGCAGCTTCAATAGCGGACAAAATCACAGCTGGAGTGAGCACTATTGAAGTGGATCACAAAAATCGTGGAACCGCATCACTTAGGACTGTTTAG 2643 0.437 TVEYGLGCITCSFTCTKGKKNSILFWHVSPTQPSPDSSNYASSSGLSGDDKEIGYRTATSKHLYLLANNSALHILPVKIDLNFARMVMAEVVGTFILMFCVCGITASTQFQNGAVGLLEYAATAGLTVVVIIFCIGPISCAHVNPAVTIAFATIGQFPWFKVPVYIIAQTVGSMSATYIGSLVYGIKSDAMMTMPLQGCNSAFWVEVIATFIIMFLIAALTSESQSVGHLSGFVAGIAIGLGVLITGPFSGGSMNPARSLGPAILSWKFKDIWIYMLAPSGGAVAGAATFRFLRLRDQHSSTLSSPNINDVGRPIPFCSKYNGKPTFTQIMVASSIGLIFAAAMHYRIKIMKDRKIIPHLRMSKASKAPKLENFSHYVARQMGFKDRKSCPQLCKLASEYIRKSEGCEDDLYAFFENEPNADSLFVKLVEEFERCILSYFAFHWSHGDVLISQVFGSEIKPRSKFKHIVMAATREQRFERVTKNLKVARVFNTLVEEMKAMGLVTNDDSRCTEVMAPVAHSDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVIIEADAFKESDVIYKALSARGHQDMIRTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWLPFVVQTITMARNVHRRRYRMGAGYKMNDDGTVTENYWQRIEGEEPEHVEGKRRKPYRIELVGVVCDAYLAVIRGIRRAIMCRRAVRVKSQLTSHKRFADAFLTYCQLVDNARLYSTNSLEGPPKLIGWKDRDKTLLVDPDEIDCLKRVARLNESANNIYELYKHPNPTCEAGSIWKDIVLSPSRLNIQKELKYSIQKVAAPGRLLHSQQQRLEHAMKIEYCQFEVPAFAASIADKITAGVSTIEVDHKNRGTASLRTV 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01058 880 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 319 821 - -
Cca02g01058 880 Pfam Zeta toxin 519 632 IPR010488 GO:0005524|GO:0016301
Cca02g01058 880 CDD MIP 85 293 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g01058 880 Gene3D Glycerol uptake facilitator protein. 66 304 IPR023271 -
Cca02g01058 880 PRINTS Major intrinsic protein family signature 124 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g01058 880 PRINTS Major intrinsic protein family signature 273 293 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g01058 880 PRINTS Major intrinsic protein family signature 85 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g01058 880 PRINTS Major intrinsic protein family signature 236 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g01058 880 PRINTS Major intrinsic protein family signature 161 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g01058 880 PRINTS Major intrinsic protein family signature 205 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g01058 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 657 IPR027417 -
Cca02g01058 880 Pfam Major intrinsic protein 82 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca02g01058 880 ProSitePatterns MIP family signature. 142 150 IPR022357 -
Cca02g01058 880 Gene3D - 508 744 IPR027417 -
Cca02g01058 880 PANTHER UNCHARACTERIZED 319 821 IPR044802 -
Cca02g01058 880 SUPERFAMILY Aquaporin-like 81 299 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01058 Cca-Chr2 27460332 27509921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01058 80 315 Major Intrinsic Protein MIP AT4G10380 39.407 1.38e-49 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01058 - - mtr:MTR_1g070385 1356.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01058 02 27460332 27509921 Cca02g01058 02 27460332 27509921 ECH
Cca03g02178 03 42398136 42402072 Cca02g01058 02 27460332 27509921 PCT