Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01051 ATGGTTGGTGAGAAGTTGTGTGTGAGCGAAGAAGACAAGGGTGTGTTGGAATCTGTGTTGGGTGCAGAGGCTGTTGCCTTCTTTATTTCAGCACTTTCCAATAATGTCTTCTCCGGCGTGGTTGCTCCGTCGGCCGGCGCCGATGTGGGGCTCCGCCACCGGCTAAGCCAGCTTGTTGAGGGTTCCAAGTGGAACTATGCTGTGTTTTGGCAGGTTGCTGGCTTGAAATCTGGTGGTTCTGCCTTGGTTTGGGGTGATGGGCATTGCAGTGATGCCAAAGGGGAGAGGAATGGAGTTGGGAAGGAGGATGAGCAGGAAGTGAGAAAGAAGGTGCTGCAGAAGCTTGATGCCTGCTTTGCGGGGTTTGTGTCAAAAGAGGCCAATTATGCAAGATTGGATAAGGTGTCTGATTTGCTCATGTTTTACTTAACCTCAATGTGTTATATATTTGGTTTTGATTTGCCGTGTGGCCCCGGCAGTTCGTTCAAGTCTGGTAAAGTGATTTGGGCTTCTGATGCTGCTGGCTGTTTGAACCAATTAGAATCTAGATCATTTCTAGGGAAATTGGCTGGTCTTCAAACTGTTGTCTTTGTTCCTTTGAAAACGGGGGTGGTTGAGCTCGGTTCGCCTGAAATGTTGCCTGAAGAGCAGGGTGTTGTGGAGATGGTCAGGACTGCATTTGGGGAATCCAGTCCGGGACAAGCGAAGGTGTTTCCGAAGATTTTTGGGCATGAATTAAGCCTGGGGGATACAAAATCTCAGTCCATAACTATTAGTTTCTCCCCAAAGGTGGAAGATGATCCTGGTTTCACTTCGGACTCCTATGAAGTTCAAGCACTAGGGGTGAACCATGGTTATGGAAATTCTTCCAATGGGACTTTAGGTGACAGCAATGAAGGGAAAATGTTCCCTCAATTGAATCAAATGATGGCTGGGAATTTCAATGCTCCAGGAAGGGGTCCTTGTCTAGATCTTGGTAATGAAGACTCATCCTCAATTCATGCAGATGAGAGGAAGCCCAGAAAAAGAGGTAGAAAGCCTGCCAATGGGAGAGAGGAACCACTAAACCATGTTGAAGCAGAGAGACAAAGACGCGAGAAGCTTAACCAGAGGTTTTATGCGTTGAGAGCGGTTGTCCCTAACATATCTAAAATGGACAAGGCATCTTTGCTTGGTGATGCCATTACCTTTATCACTGATCTCCAGATGAAGATCAAGGTGTTGGAAGCTGAGAAGAACATGATTAACAATAAGGACCAGAAGTTGTCATTGCCAGATATGGATTTTCATGATAGAGAGGATGACACAGTTATGACAGTGAGATGCCCGTTAGAGATTCACCCTGTTTCTGGTGTGGTTAAAACGTTCAGGGAGCATCAAATTGTGGCTCAAGACTCCAGTGTTTCCACTACAGACGATAAAATAATTCATACATTCTCCATAAGAACTGAGGGAGGGGAGGCTGCTGCTATACAGTTGAAAGAAAAGCTTGAAGAATCCCTTTCCAAAAATTGA 1515 0.4594 MVGEKLCVSEEDKGVLESVLGAEAVAFFISALSNNVFSGVVAPSAGADVGLRHRLSQLVEGSKWNYAVFWQVAGLKSGGSALVWGDGHCSDAKGERNGVGKEDEQEVRKKVLQKLDACFAGFVSKEANYARLDKVSDLLMFYLTSMCYIFGFDLPCGPGSSFKSGKVIWASDAAGCLNQLESRSFLGKLAGLQTVVFVPLKTGVVELGSPEMLPEEQGVVEMVRTAFGESSPGQAKVFPKIFGHELSLGDTKSQSITISFSPKVEDDPGFTSDSYEVQALGVNHGYGNSSNGTLGDSNEGKMFPQLNQMMAGNFNAPGRGPCLDLGNEDSSSIHADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMINNKDQKLSLPDMDFHDREDDTVMTVRCPLEIHPVSGVVKTFREHQIVAQDSSVSTTDDKIIHTFSIRTEGGEAAAIQLKEKLEESLSKN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01051 504 Gene3D - 345 418 IPR036638 GO:0046983
Cca02g01051 504 SMART finulus 358 407 IPR011598 GO:0046983
Cca02g01051 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 420 IPR036638 GO:0046983
Cca02g01051 504 MobiDBLite consensus disorder prediction 330 363 - -
Cca02g01051 504 CDD ACT_UUR-ACR-like 436 503 - -
Cca02g01051 504 Coils Coil 398 418 - -
Cca02g01051 504 MobiDBLite consensus disorder prediction 313 363 - -
Cca02g01051 504 PANTHER TRANSCRIPTION FACTOR BHLH3 3 503 - -
Cca02g01051 504 PANTHER MYC 3 503 IPR045084 GO:0003700|GO:0006355
Cca02g01051 504 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 227 IPR025610 -
Cca02g01051 504 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Cca02g01051 504 CDD bHLH_AtAIB_like 349 427 - -
Cca02g01051 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01051 Cca-Chr2 27365755 27367269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01051 2 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 46.667 3.70e-151 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g01051 bHLH-MYC_N 3.8e-42 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01051 - - gmx:100782107 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01051 02 27365755 27367269 Cca02g01051 02 27365755 27367269 ECH