Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01049 ATGGGGATTCCAGAAAACATAGTTGTTGGTTCTCATGTCTGGGTTGGAGATCCAGAACTAGTTTGGGTTGATGGACAAGTACTGAATATTAATGGAGAAGAAGCTGAAATCCAAACTAGTAATGAGAAGAAGGTTGTTTCCCTTGTGTCAAAATTATATCCCAAGGATGTGGATGTGCCTACTGATGGAGTTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGGAGTGCTACATAATTTGGAAACTAGATACATGATGAATGAAATATATACTTATACTGGCAATATTCTCATTGCAATCAATCCCTTCCAAAGTCTTTCACACCTGTATGATACTGATGTGATGCAAAGATACAAGGGAGCAACAATTGCAGACTTGAGCCCACATGTTTTTGCTATTGCTGAAGCAGCATATAGGGCAATGATTAATGAGGAGAAAAGCAACTGTATCCTGGTTAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACCACCAAAATGCTTATGCGGTACCTGGCATATTTAGGTGGTAACGCGGCATCTGAAGGGCGAACTGTTGAACAACAAGTTCTAGAATCAAATCCAGTTCTTGAAGCATTTGGTAATGCAAAAACTGTTAGAAATGACAATTCTAGCCGTTTTGGAAAATTTGTTGAGATTCAATTTGATAAGCGTGGAAGAATATCAGGTGCAGCCATTAGAACTTATCTGCTTGAGAAATCTCGGGTTTGCCAAGTCTCAGATCCTGAGCGTAACTATCACTGTTTCTACCTTCTCTGTGCTTCTCCTCCTGAGGAAAAGGAGAAATTTAAGTTGGGAGATCCTAGATCATTTCACTACCTTAATCAATCCAATTGCTATGACTTAGTTGGTGTTAATGCTGCTCAAGAGTATCTTAGCACAAAGAGAGCCATGGATATTGTGGGAATCAGTCAAGAGGAACAGGATGCAATTTTCAGAGTTGTAGCTTCTATTCTTCATCTTGGAAACATTAAGTTTGCAAAATCTGAAGACACTGATTCATCAGTTCTAGAAGATGAAGAATCCAAGTTTCATCTCCAAATAACGGCAGAACTTCTCATGTGTGATCCTGTTGCTTTGGAAGGTGCACTCCTTGAGCGTGTGATGGTTACGCCAGAAGAAATCATCAAGAGAAGTCTTGATCCTCTAGGTGCTGCAGTTAGCAGGGATGGTTTAGCCAAAATGCTATATTCTCGTTTATTTGACTGGTTAGTCCATAAAATTAATAGCTCCATTGGGCAGGATCCTAGCTCAAAATGTCTCATTGGCGTTCTTGACATATATGGCTTTGAAAGCTTTCAAACAAATAGTTTTGAGCAGTTTTGTATAAATTTCACAAATGAAAAGCTGCAGCAACACTTCAACCAGCATGTGTTTAAGATGGAGCAAGAGGAATACACAAAACAAGGGATTGACTGGAGCTACTTAGAATTTGTAGATAATCAAGATGTACTGGATCTCATTGAAAAGAAACCTGGTGGAATCATCGCTCTGCTTGATGAAGCTTGTATGTTTCCCAAGTCAACTCATGAAACATTTGCACAAAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATCAAGCCAAAATTGGCACGCTCAGACTTCACTGTTGTTCATTATGCAGGGGAGGTTCAGTATCAATCTGAGCAGTTTTTAGACAAAAACAAAGACTATGTTGTTCCTGAACATCAAGACATGCTAAGTGCTTCCAAATGTTCATTTGTATCAGGCCTTTTCCCTTCACTTTCTGAGGAGACAGCTAAATCTGCTAAATTTTCTTCTATTGGTTCTCGTTTCAAGCTTCAATTACAACAATTGATGGATACACTCAATCTGACAGAGCCACACTATATTAGATGTGTGAAGCCAAATAGTCAATTAAAATCTTGCTTATTTGAAAATTTGAACGTCATCCAACAATTACGATCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAGTGTGCTGGATTCCCCACTCACTGGACCTTTCATGATTTTTTAACTCGATTACGTGTTCTTGCTCCAGAGGTTCTTCGAGGAAACTTCGATGAAAAAGATTCATGTAAAATGATTTTGGAGAAGATGGGAATGACAGGTTATCAGATTGGGGAAACAAAAATATTCCTAAGAGCTGGACAGATGGCTGAATTGGATGCTCAGAGAGCATTACTGCTTAGTAATTCTGCAACAGTTATCCAAAAGCATGCTAAAACTCGTTTTAGTCGGCAAACATATATTGCCTTGCAAAAGTCCTCTGTGTTTCTGCAATCCATTTGCAGAGGAGTATTGGCTCGAAGATTGTATTATCACATGAGGAGGGGAACAGCCGCAGTCAGAATTCAAAAGCATATGCGTCGATCACTAGCCAGGAAATCATACACTGAAGTAACGAGCTCCGCCATTGTCTTGCAGACAGGTTTTCGAACAAGGGCTGCTTGTGATAATCTTAGATATAGAAAGCAAACCAGAGCATCAATTACTATTCAGTCCTATTGGCGGCGACACAAAGCTCTCTTTGAATATAAGAACCTTAAGAAAGCGTCAATCATTTCACAAAACATCGATCATTCAAATGATACACATGAAGAGAAGGTTGTTTTGGAGACACCTATGCAAAATGAAAGTCCTATGGAAGAATCTTCATATCCTGTCCAAGAAGAATCTTCAAATCATGTCCAAGAAGAATCTTCAAATCATGTCCAAGAAGAATCTTCAAATCCTGTCCAAGAAGAATCCTCAAGTCCTTTCCAAGATGATGAAAGCATTGAAGTTATCAGGGATTCCTCTAGTCCTCTCCATGACACTGAAAAGATTGAGGTTCTTAATGTAGAAATAAAAAACTTGAAGGTCAAGTTGCATACAGAAAAACAAAGAGGTGATGAATATGAAAGGAAATATGTAGAAGCTCAAGGATCTAGTGAAGAGTTACGCAAAAAGTTAGCAGAAACTGAAAAAAGAGTATATCAGCTTCAGGACTCATTGAACAGGATGATATCTTCCATGTCAACTCAAGTTGCCGAGCTGAAGATGATCTTAAGTACTTCATCAAGATTGAGTTCAACTTTTCGACCTATTGCTAGGGTTGACATTGCTTCCAGTAACTCTGATACTTCATCCACAGACTCCGACTTCACATTTCCAGCTACTGCTTCAAATGAAGCTCCTTCTTCCCCAGAGCCAAATTCTTTCAAATTAGTAGTTCAGGATGTCACTGCTGTGGATGGATCAGGATCTGAAAAGGAGGCTATTCTTGAATCACTTTCTCTCACTCACTCATCTCTCAAGTCTCCAAACTTCTCTTGTTACATATATTTGGACTGA 3351 0.3918 MGIPENIVVGSHVWVGDPELVWVDGQVLNINGEEAEIQTSNEKKVVSLVSKLYPKDVDVPTDGVDDMTKLAYLHEPGVLHNLETRYMMNEIYTYTGNILIAINPFQSLSHLYDTDVMQRYKGATIADLSPHVFAIAEAAYRAMINEEKSNCILVSGESGAGKTETTKMLMRYLAYLGGNAASEGRTVEQQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFDKRGRISGAAIRTYLLEKSRVCQVSDPERNYHCFYLLCASPPEEKEKFKLGDPRSFHYLNQSNCYDLVGVNAAQEYLSTKRAMDIVGISQEEQDAIFRVVASILHLGNIKFAKSEDTDSSVLEDEESKFHLQITAELLMCDPVALEGALLERVMVTPEEIIKRSLDPLGAAVSRDGLAKMLYSRLFDWLVHKINSSIGQDPSSKCLIGVLDIYGFESFQTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKQGIDWSYLEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFIKPKLARSDFTVVHYAGEVQYQSEQFLDKNKDYVVPEHQDMLSASKCSFVSGLFPSLSEETAKSAKFSSIGSRFKLQLQQLMDTLNLTEPHYIRCVKPNSQLKSCLFENLNVIQQLRSGGVLEAVRIKCAGFPTHWTFHDFLTRLRVLAPEVLRGNFDEKDSCKMILEKMGMTGYQIGETKIFLRAGQMAELDAQRALLLSNSATVIQKHAKTRFSRQTYIALQKSSVFLQSICRGVLARRLYYHMRRGTAAVRIQKHMRRSLARKSYTEVTSSAIVLQTGFRTRAACDNLRYRKQTRASITIQSYWRRHKALFEYKNLKKASIISQNIDHSNDTHEEKVVLETPMQNESPMEESSYPVQEESSNHVQEESSNHVQEESSNPVQEESSSPFQDDESIEVIRDSSSPLHDTEKIEVLNVEIKNLKVKLHTEKQRGDEYERKYVEAQGSSEELRKKLAETEKRVYQLQDSLNRMISSMSTQVAELKMILSTSSRLSSTFRPIARVDIASSNSDTSSTDSDFTFPATASNEAPSSPEPNSFKLVVQDVTAVDGSGSEKEAILESLSLTHSSLKSPNFSCYIYLD 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01049 1116 MobiDBLite consensus disorder prediction 880 940 - -
Cca02g01049 1116 Pfam IQ calmodulin-binding motif 832 847 IPR000048 GO:0005515
Cca02g01049 1116 Pfam IQ calmodulin-binding motif 786 803 IPR000048 GO:0005515
Cca02g01049 1116 Pfam IQ calmodulin-binding motif 760 778 IPR000048 GO:0005515
Cca02g01049 1116 CDD MYSc_Myo11 76 720 IPR036018 -
Cca02g01049 1116 ProSiteProfiles IQ motif profile. 783 809 IPR000048 GO:0005515
Cca02g01049 1116 PANTHER MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN 6 1039 - -
Cca02g01049 1116 MobiDBLite consensus disorder prediction 909 929 - -
Cca02g01049 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 862 IPR027417 -
Cca02g01049 1116 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Cca02g01049 1116 Pfam Myosin N-terminal SH3-like domain 10 45 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cca02g01049 1116 Gene3D - 252 310 - -
Cca02g01049 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 783 IPR027417 -
Cca02g01049 1116 Gene3D Kinesin motor domain 65 662 IPR036961 -
Cca02g01049 1116 Gene3D - 735 785 - -
Cca02g01049 1116 Gene3D - 786 835 - -
Cca02g01049 1116 Gene3D - 667 733 - -
Cca02g01049 1116 MobiDBLite consensus disorder prediction 1042 1071 - -
Cca02g01049 1116 MobiDBLite consensus disorder prediction 883 901 - -
Cca02g01049 1116 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cca02g01049 1116 Coils Coil 948 1003 - -
Cca02g01049 1116 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca02g01049 1116 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca02g01049 1116 SMART iq_5 757 779 IPR000048 GO:0005515
Cca02g01049 1116 SMART iq_5 782 804 IPR000048 GO:0005515
Cca02g01049 1116 SMART iq_5 830 852 IPR000048 GO:0005515
Cca02g01049 1116 SMART iq_5 734 756 IPR000048 GO:0005515
Cca02g01049 1116 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca02g01049 1116 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca02g01049 1116 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca02g01049 1116 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca02g01049 1116 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca02g01049 1116 PANTHER MYOSIN 6 1039 - -
Cca02g01049 1116 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Cca02g01049 1116 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca02g01049 1116 Gene3D - 439 623 - -
Cca02g01049 1116 ProSiteProfiles IQ motif profile. 831 858 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01049 Cca-Chr2 27296374 27338537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01049 1 1007 Myosins gene family AT1G54560 63.443 0.0 1386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01049 K10357 - gmx:100803485 1852.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01049 02 27296374 27338537 Cca02g01049 02 27296374 27338537 ECH