Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01048 ATGGAAGGAAACTATCTGAACAGAAACACTACTCCACAGAGAGATGATAGCTTTGGCTTTGAGGAGCACACATGGGGAACTTCATGGCCTGCAAGAAACTATGCTTGTAGTTTTTGCAAGAGAGAGTTTAGGTCTGCACAAGCATTGGGTGGACACATGAATGTTCACAGAAGGGATAGGGCAAGATTAAGATCATCCTTATCTTCGTGGGTTTCTGAATgccctaaacctaaccctagcactaagcctaacccAAATCTTCTTCCACCCTCTTCTTCACCTTCTCCTTTATCTGATGAGCCTTTGAACTATGCACACCCTTCTCCACTTTGTAGTCCTTGTCTCACTTTGTCTTCCTCACCTTCCCCAGCTTCTGCCAGTGGAGATAAGAAACCAAGACTCACACCTTCTCATCTTTTGAGTCCTCAAAGCAGGGAAATTAAGATGATGAGTGGTTTAAGTGCTGATGAGGAAATGAAGGGCTGTGTAgaggaggaggaggaggaggaggaACACAAGGGTTTCAAGAACAATGAGCAGAACATTACGTTGGAGTTAGGAATAGGGTTGCTTAAACACCAAGAGGAGAAGTTAGATTTGGAGCTTCGACTCGGGCATTTCTAG 624 0.3958 MEGNYLNRNTTPQRDDSFGFEEHTWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPSTKPNPNLLPPSSSPSPLSDEPLNYAHPSPLCSPCLTLSSSPSPASASGDKKPRLTPSHLLSPQSREIKMMSGLSADEEMKGCVEEEEEEEEHKGFKNNEQNITLELGIGLLKHQEEKLDLELRLGHF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01048 207 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Cca02g01048 207 Gene3D Classic Zinc Finger 20 77 - -
Cca02g01048 207 MobiDBLite consensus disorder prediction 70 103 - -
Cca02g01048 207 PANTHER OS07G0101800 PROTEIN 21 206 - -
Cca02g01048 207 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 21 206 - -
Cca02g01048 207 SMART c2h2final6 34 56 IPR013087 -
Cca02g01048 207 MobiDBLite consensus disorder prediction 78 96 - -
Cca02g01048 207 MobiDBLite consensus disorder prediction 1 22 - -
Cca02g01048 207 Pfam C2H2-type zinc finger 34 58 - -
Cca02g01048 207 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Cca02g01048 207 MobiDBLite consensus disorder prediction 116 177 - -
Cca02g01048 207 SUPERFAMILY beta-beta-alpha zinc fingers 31 60 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01048 Cca-Chr2 27295724 27296347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01048 22 205 C2H2 Transcription Factor Family AT3G23130 39.037 5.52e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g01048 zf-C2H2_6 5.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01048 - - gmx:102662947 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02185 03 42556921 42558209 Cca02g01048 02 27295724 27296347 PCT